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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0512000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.07 (0.0191) R2 : 0.338
β1 : -0.291 (0.0746) R2dD : 0.027 R2D : -0.041
β2 : -- (--) R2dC : -- R2C : --
β3 : -0.734 (0.194) R2dE : 0.0493 R2E : -0.197
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -22.8 (1.81) R2dD*E : 0.571 R2D*E : 0.264
γ1 : -0.0106 (0.0413) R2dN8 : 0.000135 R2N8 : -0.00667
σ : 0.353
deviance : 56.95
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 19.23
memory length : 17
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.1
open length of G : 0.947

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
56.46 0.353 3.07 -0.298 0.0765 -0.73 0.21 -22.8 -0.0114 9.17 19.05 17 2.1 0.959
76.34 0.41 3.1 0.0609 0.0605 1.1 0.283 -- -0.0155 10.7 24.6 2 2.36 1.1
56.58 0.353 3.07 -0.292 0.0829 -0.744 -- -22.8 -0.0109 7.88 19.05 17 2.1 0.959
76.51 0.41 3.1 0.0703 0.0831 1.08 -- -- -0.0146 7.85 23.39 2 2.92 0.51
56.95 0.353 3.07 -0.291 -- -0.734 -- -22.8 -0.0106 -- 19.23 17 2.1 0.947
84.32 0.43 3.09 0.0635 0.114 -- -0.457 -- 0.064 4.09 -- -- -- --
84.76 0.431 3.08 0.0693 0.127 -- -- -- 0.0664 5.68 -- -- -- --
76.89 0.41 3.1 0.0713 -- 1.09 -- -- -0.0143 -- 19.23 17 2.1 0.947
76.64 0.41 3.1 -- 0.0836 1.08 -- -- -0.0224 7.79 23.13 2 2.92 0.638
85.59 0.432 3.08 0.0733 -- -- -- -- 0.0695 -- -- -- -- --
84.89 0.431 3.08 -- 0.128 -- -- -- 0.0587 5.65 -- -- -- --
77.02 0.41 3.11 -- -- 1.09 -- -- -0.0222 -- 19.18 15 2.27 1.03
85.74 0.432 3.09 -- -- -- -- -- 0.0613 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 56.81 temperature 20.0 30 > th dose dependent rect. 2 1
2 57.03 temperature 20.0 30 > th dose independent rect. 2 1
3 57.03 atmosphere 1005.0 30 > th dose dependent rect. 2 1
6 57.09 atmosphere 1005.0 30 > th dose independent rect. 2 1
10 57.32 wind 3.0 30 < th dose dependent rect. 2 1
12 57.36 wind 3.0 30 < th dose independent rect. 2 1
15 57.50 humidity 80.0 30 > th dose independent rect. 2 1
19 57.58 temperature 10.0 30 > th dose independent rect. 2 1
21 57.58 temperature 30.0 30 < th dose independent rect. 2 1
22 57.58 humidity 50.0 30 > th dose independent rect. 2 1
26 57.58 atmosphere 1010.0 30 < th dose independent rect. 2 1
28 57.58 radiation 1.0 30 < th dose independent rect. 2 1
33 57.58 precipitation 0.1 30 < th dose independent rect. 2 1
34 57.58 temperature 10.0 30 > th dose independent rect. 3 23
35 57.58 humidity 50.0 30 > th dose dependent rect. 2 1
37 57.58 radiation 1.0 30 < th dose dependent rect. 2 1
42 57.58 precipitation 0.1 30 < th dose dependent rect. 2 1
49 58.66 atmosphere 1015.0 30 < th dose dependent rect. 2 1
50 59.21 temperature 30.0 30 < th dose dependent rect. 2 1
53 60.01 wind 1.0 30 > th dose independent rect. 2 1
99 63.95 radiation 10.0 43200 < th dose dependent rect. 3 1
108 64.07 wind 9.0 1440 < th dose independent rect. 3 1
109 64.07 temperature 10.0 1440 > th dose independent rect. 3 1
112 64.07 temperature 30.0 1440 < th dose independent rect. 3 1
116 64.07 humidity 50.0 1440 > th dose independent rect. 3 1
125 64.07 atmosphere 995.0 1440 > th dose independent rect. 3 1
126 64.07 radiation 1.0 1440 < th dose independent rect. 3 1
146 64.07 temperature 10.0 1440 > th dose independent rect. 4 23
149 64.07 radiation 1.0 1440 < th dose dependent rect. 3 1
160 64.34 wind 9.0 30 < th dose independent rect. 3 23
169 67.07 atmosphere 995.0 30 > th dose independent rect. 3 23
174 67.88 precipitation 0.1 30 < th dose independent rect. 3 23
175 67.88 precipitation 0.1 30 < th dose dependent rect. 3 23
247 73.54 humidity 50.0 30 > th dose independent rect. 3 23
267 75.02 temperature 30.0 30 < th dose independent rect. 3 23
270 75.07 temperature 25.0 270 > th dose independent rect. 23 4
317 76.72 humidity 90.0 90 < th dose independent rect. 2 1
366 77.13 temperature 20.0 270 > th dose dependent rect. 23 4
514 78.02 wind 3.0 10 < th dose dependent rect. 2 6
552 78.40 atmosphere 1015.0 30 < th dose independent rect. 3 23
562 78.48 wind 1.0 10 < th dose independent rect. 14 13
565 78.51 wind 1.0 10 < th dose independent rect. 17 10
571 78.53 wind 1.0 10 < th dose independent rect. 21 6
586 78.66 wind 1.0 10 < th dose independent rect. 2 10
589 78.67 wind 1.0 90 > th dose independent rect. 3 23
639 79.01 wind 1.0 10 < th dose independent rect. 6 22
645 79.07 wind 1.0 10 < th dose independent rect. 8 20
651 79.11 atmosphere 995.0 720 > th dose independent rect. 15 8
655 79.13 temperature 10.0 720 > th dose independent rect. 15 8
656 79.13 temperature 10.0 720 > th dose independent rect. 23 16
659 79.14 atmosphere 995.0 720 > th dose independent rect. 23 16
662 79.14 wind 1.0 10 > th dose independent rect. 21 23
668 79.17 wind 3.0 30 < th dose dependent rect. 2 10
685 79.27 wind 1.0 10 > th dose independent sin 14 NA
700 79.34 atmosphere 995.0 720 > th dose independent rect. 11 16
703 79.35 radiation 10.0 10 < th dose dependent rect. 4 22
709 79.38 precipitation 0.1 720 < th dose independent rect. 15 8
713 79.38 precipitation 0.1 720 < th dose dependent rect. 15 8
715 79.39 temperature 10.0 720 > th dose independent rect. 3 8
716 79.39 atmosphere 995.0 720 > th dose independent rect. 3 8
717 79.39 temperature 10.0 720 > th dose independent rect. 11 16
737 79.45 radiation 10.0 30 < th dose independent rect. 4 22
767 79.50 humidity 50.0 720 > th dose independent rect. 3 8
773 79.51 temperature 10.0 10 > th dose dependent rect. 4 22
865 79.67 radiation 40.0 10 < th dose dependent rect. 14 12
866 79.68 wind 1.0 10 > th dose independent sin 6 NA
868 79.68 wind 9.0 720 < th dose independent rect. 3 8
869 79.68 wind 3.0 10 < th dose dependent rect. 22 6
887 79.77 temperature 25.0 720 > th dose independent rect. 16 11
897 79.81 radiation 1.0 10 < th dose dependent rect. 2 12
931 79.93 precipitation 0.1 720 < th dose independent rect. 11 16
933 79.93 precipitation 0.1 720 < th dose dependent rect. 11 16
936 79.94 radiation 1.0 10 < th dose dependent rect. 2 6
938 79.94 wind 3.0 10 < th dose dependent rect. 20 8
963 79.99 radiation 20.0 10 < th dose dependent rect. 14 12
989 80.01 wind 9.0 720 < th dose dependent rect. 2 1
997 80.01 radiation 20.0 10 < th dose dependent rect. 16 10