Os05g0486600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description :
FiT-DB / Search/ Help/ Sample detail
|
Os05g0486600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description :
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 181.91 | 0.634 | 5.71 | 1.72 | 0.884 | -2.05 | 0.136 | -0.196 | 2.08 | 22.5 | 22.2 | 1079 | -- | -- |
| 181.95 | 0.628 | 5.71 | 1.71 | 0.884 | -2 | 0.169 | -- | 2.08 | 22.6 | 22.21 | 1077 | -- | -- |
| 181.97 | 0.628 | 5.71 | 1.72 | 0.887 | -2.08 | -- | -0.271 | 2.08 | 22.5 | 22.18 | 1088 | -- | -- |
| 182.04 | 0.628 | 5.72 | 1.69 | 0.889 | -2.02 | -- | -- | 2.08 | 22.5 | 22.2 | 1087 | -- | -- |
| 223.24 | 0.696 | 5.69 | 1.86 | -- | -2.19 | -- | -0.531 | 2.09 | -- | 22.72 | 876 | -- | -- |
| 223.82 | 0.701 | 5.66 | 2.24 | 1.02 | -- | 0.119 | -- | 2.36 | 22.8 | -- | -- | -- | -- |
| 223.87 | 0.701 | 5.66 | 2.24 | 1.02 | -- | -- | -- | 2.36 | 22.8 | -- | -- | -- | -- |
| 222.59 | 0.695 | 5.71 | 1.65 | -- | -2.29 | -- | -- | 2.02 | -- | 22.7 | 846 | -- | -- |
| 212.4 | 0.679 | 5.8 | -- | 1.01 | -2.07 | -- | -- | 1.74 | 22.7 | 18.81 | 47520 | -- | -- |
| 288.24 | 0.793 | 5.63 | 2.26 | -- | -- | -- | -- | 2.37 | -- | -- | -- | -- | -- |
| 355.86 | 0.882 | 5.71 | -- | 1.04 | -- | -- | -- | 2.11 | 22.9 | -- | -- | -- | -- |
| 274.41 | 0.772 | 5.78 | -- | -- | -2.09 | -- | -- | 1.71 | -- | 19.32 | 47520 | -- | -- |
| 422.78 | 0.96 | 5.69 | -- | -- | -- | -- | -- | 2.12 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 163.13 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 164.28 | wind | 3.0 | 14400 | < th | dose independent | rect. | 21 | 7 |
| 3 | 164.37 | wind | 3.0 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 14 | 165.87 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 21 | 166.40 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 22 | 166.44 | wind | 9.0 | 14400 | > th | dose independent | rect. | 7 | 4 |
| 24 | 166.62 | wind | 9.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 32 | 167.30 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 2 |
| 36 | 167.55 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 38 | 167.60 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 43 | 168.07 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 50 | 168.38 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 52 | 168.50 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 21 | 8 |
| 53 | 168.60 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 73 | 169.15 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 148 | 170.51 | wind | 3.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 153 | 170.55 | wind | 3.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 170 | 170.75 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 2 |
| 185 | 171.05 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 191 | 171.13 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 240 | 171.70 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 293 | 172.23 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 332 | 172.50 | wind | 1.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 337 | 172.59 | wind | 3.0 | 43200 | < th | dose dependent | sin | 8 | NA |
| 422 | 173.18 | wind | 9.0 | 14400 | < th | dose dependent | sin | 9 | NA |
| 460 | 173.37 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 461 | 173.37 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 12 | 3 |
| 494 | 173.55 | temperature | 20.0 | 720 | > th | dose independent | rect. | 3 | 16 |
| 559 | 173.98 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 638 | 174.33 | temperature | 20.0 | 720 | > th | dose independent | sin | 1 | NA |
| 723 | 174.75 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 763 | 174.92 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 817 | 175.14 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 834 | 175.25 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 9 | 1 |
| 856 | 175.33 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 876 | 175.42 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 907 | 175.51 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 920 | 175.53 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 9 |
| 947 | 175.60 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 952 | 175.63 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 9 |
| 955 | 175.63 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 9 |
| 957 | 175.64 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 995 | 175.74 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 7 | 10 |