BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0506800 Os04g0506800|AK070719
(384 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0506800 Glycosyl transferase, family 29 protein 636 0.0
Os01g0858900 Glycosyl transferase, family 29 protein 301 4e-82
Os12g0151500 Similar to Alpha-2,8-sialyltransferase 8B (EC ... 270 1e-72
>Os04g0506800 Glycosyl transferase, family 29 protein
Length = 384
Score = 636 bits (1641), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/384 (84%), Positives = 323/384 (84%)
Query: 1 MKRRHWSHPSCGXXXXXXXXXXXXXFRCSQLRHSXXXXXXXXXXXXXXXXXXXXXXERLV 60
MKRRHWSHPSCG FRCSQLRHS ERLV
Sbjct: 1 MKRRHWSHPSCGLLLLVAVFCLLLVFRCSQLRHSGDGAAAAAPDGGAGRNDGDDVDERLV 60
Query: 61 ELAAVDPAAMAVLQAAKRLLEGNLARAPERHRDVALRGLREWVGKQERFDPGVMSELVEL 120
ELAAVDPAAMAVLQAAKRLLEGNLARAPERHRDVALRGLREWVGKQERFDPGVMSELVEL
Sbjct: 61 ELAAVDPAAMAVLQAAKRLLEGNLARAPERHRDVALRGLREWVGKQERFDPGVMSELVEL 120
Query: 121 IKRPIDRYNXXXXXXXXXXXRRYASCAVVGNSGILLAAEHGELIDGHELVVRLNNAPAGD 180
IKRPIDRYN RRYASCAVVGNSGILLAAEHGELIDGHELVVRLNNAPAGD
Sbjct: 121 IKRPIDRYNGDGGGGGEGEGRRYASCAVVGNSGILLAAEHGELIDGHELVVRLNNAPAGD 180
Query: 181 GRYARHVGARTGLAFLNSNVLSQCAVPRRGACFCRAYGEGVPILTYMCNAAHFVEHAVCN 240
GRYARHVGARTGLAFLNSNVLSQCAVPRRGACFCRAYGEGVPILTYMCNAAHFVEHAVCN
Sbjct: 181 GRYARHVGARTGLAFLNSNVLSQCAVPRRGACFCRAYGEGVPILTYMCNAAHFVEHAVCN 240
Query: 241 NXXXXXXXXXXXXXXXPVIVTDPRLDALCARIVKYYSLRRFARETGRPAEEWARRHEEGM 300
N PVIVTDPRLDALCARIVKYYSLRRFARETGRPAEEWARRHEEGM
Sbjct: 241 NASSSSSGAADATAAAPVIVTDPRLDALCARIVKYYSLRRFARETGRPAEEWARRHEEGM 300
Query: 301 FHYSSGMQAVVAAAGVCDRVSVFGFGKDASARHHYHTLQRRELDLHDYEAEYEFYRDLES 360
FHYSSGMQAVVAAAGVCDRVSVFGFGKDASARHHYHTLQRRELDLHDYEAEYEFYRDLES
Sbjct: 301 FHYSSGMQAVVAAAGVCDRVSVFGFGKDASARHHYHTLQRRELDLHDYEAEYEFYRDLES 360
Query: 361 RPEAIPFLRQRNSGFRLPPVSFYR 384
RPEAIPFLRQRNSGFRLPPVSFYR
Sbjct: 361 RPEAIPFLRQRNSGFRLPPVSFYR 384
>Os01g0858900 Glycosyl transferase, family 29 protein
Length = 393
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 164/296 (55%), Positives = 190/296 (64%), Gaps = 31/296 (10%)
Query: 89 ERHRDVALR-GLREWVGKQERFDPGVMSELVELIKRPIDRYNXXXXXXXXXXXRRYASCA 147
E H D +LR LR W + R DPGV+ L L+ P R SCA
Sbjct: 127 ELHLDPSLRRALRSW-HRLRRHDPGVLRNLPSLLSLP----------------GRIPSCA 169
Query: 148 VVGNSGILLAAEHGELIDGHELVVRLNNAPAGDGRYARHVGARTGLAFLNSNVLSQCAVP 207
VVGNSGILL A HG LID H V RLNNA +A +VGA+T L+F+NSNVL CA
Sbjct: 170 VVGNSGILLGASHGALIDSHAAVFRLNNARISG--FAANVGAKTNLSFINSNVLHLCA-- 225
Query: 208 RRGACFCRAYGEGVPILTYMCNAAHFVEHAVCNNXXXXXXXXXXXXXXXPVIVTDPRLDA 267
RR CFC YG+GVPIL Y+C AAHF++ A CN + VTDPRLD
Sbjct: 226 RRPNCFCHPYGDGVPILLYICQAAHFLDVASCNASSRSLHAAS-------ISVTDPRLDV 278
Query: 268 LCARIVKYYSLRRFARETGRPAEEWARRHEEGMFHYSSGMQAVVAAAGVCDRVSVFGFGK 327
LCARIVKYYSLRRF ETGR AEEW+ + MFHYSSGMQA++ A GVCDRVSVFGFGK
Sbjct: 279 LCARIVKYYSLRRFVAETGRAAEEWSSTRDAAMFHYSSGMQAIMVAVGVCDRVSVFGFGK 338
Query: 328 DASARHHYHTLQRRELDLHDYEAEYEFYRDLESRPEAIPFLRQRNSGFRLPPVSFY 383
A A+HHYH+ Q+ ELDLHDY+AEY FYRDL RPE +PFL ++G +PPV FY
Sbjct: 339 AADAKHHYHSNQKAELDLHDYKAEYAFYRDLADRPEVVPFL--NDAGIAVPPVVFY 392
>Os12g0151500 Similar to Alpha-2,8-sialyltransferase 8B (EC 2.4.99.-) (ST8Sia II)
(Sialyltransferase X) (STX)
Length = 396
Score = 270 bits (691), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 136/246 (55%), Positives = 165/246 (67%), Gaps = 13/246 (5%)
Query: 141 RRYASCAVVGNSGILLAAEHGELIDGHELVVRLNNAPAGDGRYARHVGARTGLAFLNSNV 200
RRY +CAVVGNSG+LL + G ID H+LV+RLNNA +A VG +T L+F+NSN+
Sbjct: 160 RRYRTCAVVGNSGVLLGSGRGPQIDAHDLVIRLNNARVAG--FAADVGVKTSLSFVNSNI 217
Query: 201 LSQCAV---PRRGACFCRAYGEGVPILTYMCNAAHFVEHAVCNNXXXXXXXXXXXXXXXP 257
L CA R AC C YG VP+ Y+C AH ++ +CN P
Sbjct: 218 LHICAARNAITRAACGCHPYGGEVPMAMYVCQPAHLLDALICN-------ATATPSSPFP 270
Query: 258 VIVTDPRLDALCARIVKYYSLRRFARETGRPAEEWARRHEEGMFHYSSGMQAVVAAAGVC 317
++VTD RLDALCARI KYYSLRRF TG PA W RRH+E FHYSSGMQAVV A GVC
Sbjct: 271 LLVTDARLDALCARIAKYYSLRRFVSATGEPAANWTRRHDERYFHYSSGMQAVVMALGVC 330
Query: 318 DRVSVFGFGKDASARHHYHTLQRRELDLHDYEAEYEFYRDLESRPEAIPFLRQRNSGFRL 377
D VS+FGFGK A+HHYHT Q++ELDLHDYEAEY+FY DL++RP A+PFL + GF +
Sbjct: 331 DEVSLFGFGKSPGAKHHYHTNQKKELDLHDYEAEYDFYGDLQARPAAVPFLDDAH-GFTV 389
Query: 378 PPVSFY 383
PPV +
Sbjct: 390 PPVRLH 395
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.138 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,718,332
Number of extensions: 446208
Number of successful extensions: 1294
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1285
Number of HSP's successfully gapped: 3
Length of query: 384
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 281
Effective length of database: 11,657,759
Effective search space: 3275830279
Effective search space used: 3275830279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 157 (65.1 bits)