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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0506800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycosyl transferase, family 29 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.3 (0.0508) R2 : 0.498
β1 : 1.97 (0.187) R2dD : 0.151 R2D : 0.192
β2 : 1.28 (0.123) R2dC : 0.117 R2C : 0.138
β3 : 0.966 (0.232) R2dE : 0.0229 R2E : 0.0986
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.66 (0.973) R2dD*E : 0.0953 R2D*E : 0.11
γ1 : -0.407 (0.104) R2dN8 : 0.0261 R2N8 : 0.0426
σ : 0.897
deviance : 370.84
__
_____
C
peak time of C : 4.33
E
wheather : wind
threshold : 1.096
memory length : 5826
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 1.89
open length of G : 3.02

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
373.03 0.907 4.3 2 1.28 0.898 0.26 7.55 -0.424 4.25 1.066 5733 1.85 2.97
420 0.954 4.44 1.74 1.25 1.67 0.153 -- -0.411 4.1 1.163 5735 2.24 3.08
370.84 0.897 4.3 1.97 1.28 0.966 -- 7.66 -0.407 4.33 1.096 5826 1.89 3.02
418.07 0.952 4.44 1.53 1.29 1.81 -- -- -0.392 4.16 1.159 5721 2.2 3.13
454.96 0.993 4.3 2.08 -- 1.05 -- 8.48 -0.376 -- 1.088 5831 1.91 2.98
467.72 1.01 4.45 2.07 1.37 -- 0.0114 -- -0.6 4.4 -- -- -- --
467.72 1.01 4.45 2.07 1.37 -- -- -- -0.6 4.4 -- -- -- --
502.19 1.04 4.44 1.54 -- 1.89 -- -- -0.46 -- 1.137 6047 2.22 3.1
469.29 1.01 4.43 -- 1.36 2.36 -- -- -0.432 4.23 1.159 5721 2.27 3.1
568.32 1.11 4.46 2.12 -- -- -- -- -0.563 -- -- -- -- --
580.38 1.13 4.51 -- 1.41 -- -- -- -0.83 4.36 -- -- -- --
553.29 1.1 4.45 -- -- 2.52 -- -- -0.545 -- 1.123 6043 2.27 3.1
687.03 1.22 4.52 -- -- -- -- -- -0.799 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 382.81 precipitation 0.1 43200 > th dose dependent rect. 17 4
2 383.60 radiation 10.0 43200 < th dose dependent rect. 7 3
5 385.01 radiation 10.0 43200 < th dose dependent rect. 7 6
8 385.54 precipitation 0.1 43200 > th dose dependent rect. 17 2
10 385.78 radiation 10.0 43200 > th dose independent rect. 16 21
15 386.27 radiation 20.0 43200 < th dose dependent rect. 9 3
16 386.53 radiation 10.0 43200 > th dose independent sin 4 NA
21 386.75 radiation 10.0 43200 > th dose independent rect. 17 23
28 387.20 radiation 10.0 43200 > th dose independent rect. 6 10
48 387.45 radiation 10.0 43200 > th dose independent rect. 7 3
105 388.52 radiation 10.0 43200 > th dose independent no NA NA
229 388.83 wind 7.0 43200 > th dose independent rect. 13 1
232 389.03 wind 7.0 43200 < th dose independent rect. 13 1
268 389.80 precipitation 0.1 43200 > th dose independent rect. 16 2
269 389.89 radiation 10.0 43200 > th dose independent rect. 10 23
271 389.91 precipitation 0.1 43200 < th dose independent rect. 16 2
272 389.91 precipitation 0.1 43200 < th dose dependent rect. 16 2
273 390.09 radiation 20.0 43200 > th dose independent rect. 11 1
296 391.48 wind 9.0 43200 > th dose dependent rect. 14 7
298 391.84 wind 1.0 43200 < th dose independent rect. 5 4
299 391.91 wind 1.0 43200 > th dose independent rect. 5 4
307 392.12 atmosphere 1005.0 43200 < th dose dependent rect. 10 8
309 392.17 atmosphere 1005.0 43200 < th dose dependent rect. 11 6
311 392.19 atmosphere 1005.0 43200 < th dose dependent rect. 15 2
314 392.23 atmosphere 1005.0 43200 < th dose dependent rect. 13 4
320 392.40 precipitation 0.1 43200 > th dose dependent rect. 20 1
371 393.24 radiation 20.0 43200 > th dose independent rect. 9 3
388 393.63 wind 1.0 43200 < th dose dependent rect. 4 12
419 394.37 atmosphere 1005.0 43200 < th dose dependent sin 23 NA
420 394.39 wind 1.0 43200 < th dose dependent rect. 5 5
440 394.76 precipitation 0.1 43200 > th dose independent rect. 19 2
461 395.07 precipitation 0.1 43200 < th dose independent rect. 19 2
462 395.07 precipitation 0.1 43200 < th dose dependent rect. 19 2
494 395.77 wind 9.0 43200 > th dose dependent rect. 11 11
496 395.80 humidity 80.0 43200 > th dose independent rect. 8 2
500 395.84 wind 7.0 43200 < th dose independent rect. 18 4
503 395.86 wind 7.0 43200 > th dose dependent rect. 12 3
587 396.66 wind 1.0 43200 < th dose independent rect. 3 13
684 397.50 radiation 20.0 43200 < th dose dependent rect. 23 13
698 397.54 wind 1.0 43200 < th dose independent sin 4 NA
699 397.54 wind 9.0 43200 < th dose independent rect. 12 9
701 397.55 atmosphere 1005.0 43200 < th dose dependent no NA NA
703 397.56 atmosphere 1005.0 43200 < th dose dependent rect. 8 23
717 397.65 humidity 80.0 43200 < th dose independent rect. 9 1
719 397.65 wind 5.0 43200 > th dose dependent rect. 17 6
723 397.66 wind 1.0 4320 < th dose independent rect. 2 3
724 397.66 wind 9.0 43200 > th dose dependent rect. 14 4
725 397.67 atmosphere 1005.0 43200 < th dose dependent rect. 13 23
755 397.90 wind 7.0 43200 > th dose independent rect. 18 4
765 397.95 wind 1.0 43200 < th dose dependent sin 3 NA
839 398.41 wind 9.0 43200 > th dose independent rect. 14 7
847 398.46 wind 1.0 43200 < th dose independent rect. 24 16
852 398.51 atmosphere 1005.0 43200 < th dose dependent rect. 4 3
853 398.52 wind 9.0 43200 > th dose independent rect. 12 9
858 398.54 humidity 80.0 43200 < th dose independent rect. 8 3
891 398.66 atmosphere 1005.0 43200 < th dose dependent rect. 3 6
918 398.80 radiation 40.0 43200 > th dose independent rect. 14 1
919 398.80 wind 1.0 43200 < th dose independent rect. 4 8
965 399.08 wind 1.0 4320 > th dose independent rect. 1 4