BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0506800 Os04g0506800|AK070719
         (384 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08280.1  | chr1:2608408-2609604 FORWARD LENGTH=399            282   2e-76
AT1G08660.1  | chr1:2757116-2759677 REVERSE LENGTH=475             54   1e-07

>AT1G08280.1 | chr1:2608408-2609604 FORWARD LENGTH=399
          Length = 398

 Score =  282 bits (722), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 136/288 (47%), Positives = 189/288 (65%), Gaps = 24/288 (8%)

Query: 97  RGLREWVGKQERFDPGVMSELVELIKRPIDRYNXXXXXXXXXXXRRYASCAVVGNSGILL 156
           R LR W  ++  ++P +M +L+ L+K PID +N            RY SCAVVGNSG LL
Sbjct: 133 RNLRLW-ARRRAYEPNIMLDLIRLVKNPIDVHNGVVSISS----ERYLSCAVVGNSGTLL 187

Query: 157 AAEHGELIDGHELVVRLNNAPAGDGRYARHVGARTGLAFLNSNVLSQCAVPRRGACFCRA 216
            +++G+LID HE+V+RLNNA     R+ + VG++T ++F+NSN+L QC   RR +C+C  
Sbjct: 188 NSQYGDLIDKHEIVIRLNNAKTE--RFEKKVGSKTNISFINSNILHQCG--RRESCYCHP 243

Query: 217 YGEGVPILTYMCNAAHFVEHAVCNNXXXXXXXXXXXXXXXPVIVTDPRLDALCARIVKYY 276
           YGE VPI+ Y+C   H +++ +C                 P+++TDPR D +CARIVKYY
Sbjct: 244 YGETVPIVMYICQPIHVLDYTLCK-----------PSHRAPLLITDPRFDVMCARIVKYY 292

Query: 277 SLRRFARET-GRPAEEWARRHEEGMFHYSSGMQAVVAAAGVCDRVSVFGFGKDASARHHY 335
           S+++F  E   +   +W++ HE  +FHYSSGMQAV+ A G+C++VSVFGFGK  S +HHY
Sbjct: 293 SVKKFLEEKKAKGFVDWSKDHEGSLFHYSSGMQAVMLAVGICEKVSVFGFGKLNSTKHHY 352

Query: 336 HTLQRRELDLHDYEAEYEFYRDLESRPEAIPFLRQRNSGFRLPPVSFY 383
           HT Q+ EL LHDYEAEY  YRDLE+ P AIPFL +    F++P V  Y
Sbjct: 353 HTNQKAELKLHDYEAEYRLYRDLENSPRAIPFLPKE---FKIPLVQVY 397



>AT1G08660.1 | chr1:2757116-2759677 REVERSE LENGTH=475
          Length = 474

 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 34/50 (68%), Gaps = 1/50 (2%)

Query: 141 RRYASCAVVGNSGILLAAEHGELIDGHELVVRLNNAPAGDGRYARHVGAR 190
           R++  CAVVGNSG LL  E GE ID H+ V R N AP  + +YA++VG +
Sbjct: 176 RQFHKCAVVGNSGDLLKTEFGEEIDSHDAVFRDNEAPVNE-KYAKYVGVK 224



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,956,765
Number of extensions: 250552
Number of successful extensions: 690
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 685
Number of HSP's successfully gapped: 2
Length of query: 384
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 284
Effective length of database: 8,364,969
Effective search space: 2375651196
Effective search space used: 2375651196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)