BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0505700 Os04g0505700|AK071138
(415 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0505700 Leucine-rich repeat, cysteine-containing subty... 702 0.0
Os03g0661200 113 2e-25
Os05g0425700 Similar to F-box protein AtFBL5 79 8e-15
Os01g0881900 Leucine-rich repeat, cysteine-containing conta... 77 3e-14
Os12g0108500 Cyclin-like F-box domain containing protein 75 9e-14
Os12g0552700 Leucine-rich repeat, cysteine-containing subty... 65 8e-11
>Os04g0505700 Leucine-rich repeat, cysteine-containing subtype containing protein
Length = 415
Score = 702 bits (1811), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/415 (86%), Positives = 358/415 (86%)
Query: 1 ARGSGTDSLSDDGARQVXXXXXXXXXXXXXXXXXXXXSDDGLASLAGATPVIRKLSVASC 60
ARGSGTDSLSDDGARQV SDDGLASLAGATPVIRKLSVASC
Sbjct: 1 ARGSGTDSLSDDGARQVAAALPSARLARLKLRGLRQLSDDGLASLAGATPVIRKLSVASC 60
Query: 61 SFGPKAFVAVLRSCPLLEDLSVKRLRGLPDXXXXXXXXXXXXLFPPASSLRSVCLKDLYS 120
SFGPKAFVAVLRSCPLLEDLSVKRLRGLPD LFPPASSLRSVCLKDLYS
Sbjct: 61 SFGPKAFVAVLRSCPLLEDLSVKRLRGLPDTAGATTAITEEILFPPASSLRSVCLKDLYS 120
Query: 121 ALCFVPLVASSPNLRSLKILRCSGSWDLPLEVIAARVPGLVELHLEKLQVGDRGLSAVSA 180
ALCFVPLVASSPNLRSLKILRCSGSWDLPLEVIAARVPGLVELHLEKLQVGDRGLSAVSA
Sbjct: 121 ALCFVPLVASSPNLRSLKILRCSGSWDLPLEVIAARVPGLVELHLEKLQVGDRGLSAVSA 180
Query: 181 CANLEVLFLVKTPECTDAGIISVAEKCHKLRKLHIDGWRTNRIGDHGLMAVARGCPDLQE 240
CANLEVLFLVKTPECTDAGIISVAEKCHKLRKLHIDGWRTNRIGDHGLMAVARGCPDLQE
Sbjct: 181 CANLEVLFLVKTPECTDAGIISVAEKCHKLRKLHIDGWRTNRIGDHGLMAVARGCPDLQE 240
Query: 241 LVLIGVNPTVQSLRMLGEHCRSLERLALCGCETVGDPEIICLAERCAALKKLCIKGCPVS 300
LVLIGVNPTVQSLRMLGEHCRSLERLALCGCETVGDPEIICLAERCAALKKLCIKGCPVS
Sbjct: 241 LVLIGVNPTVQSLRMLGEHCRSLERLALCGCETVGDPEIICLAERCAALKKLCIKGCPVS 300
Query: 301 DRGMWALNGGCPSLVKVKLKRCRGVSYECIENLKVVRGGSFSISLDIVLERDAGGAIENG 360
DRGMWALNGGCPSLVKVKLKRCRGVSYECIENLKVVRGGSFSISLDIVLERDAGGAIENG
Sbjct: 301 DRGMWALNGGCPSLVKVKLKRCRGVSYECIENLKVVRGGSFSISLDIVLERDAGGAIENG 360
Query: 361 GQEAGQVQITELTDQMAAMDLPTXXXXXXXXXXXXXXXXXXXXXXXXXFGNPPAL 415
GQEAGQVQITELTDQMAAMDLPT FGNPPAL
Sbjct: 361 GQEAGQVQITELTDQMAAMDLPTNASNAQSSAQASSRMRSVMSALRRRFGNPPAL 415
>Os03g0661200
Length = 164
Score = 113 bits (283), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/88 (70%), Positives = 64/88 (72%)
Query: 1 ARGSGTDSLSDDGARQVXXXXXXXXXXXXXXXXXXXXSDDGLASLAGATPVIRKLSVASC 60
A+GSGTDSLSDDGAR V DDG+ASLAGATPVIRKLSVAS
Sbjct: 76 AQGSGTDSLSDDGARHVVAALPSEWLARLKLRGLRQLFDDGIASLAGATPVIRKLSVASI 135
Query: 61 SFGPKAFVAVLRSCPLLEDLSVKRLRGL 88
SFGPKAFV VLRSCPLLEDLSVKRLRGL
Sbjct: 136 SFGPKAFVTVLRSCPLLEDLSVKRLRGL 163
>Os05g0425700 Similar to F-box protein AtFBL5
Length = 376
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 109/247 (44%), Gaps = 36/247 (14%)
Query: 159 GLVELHLEKLQ--VGDRGLSAVSACANLEVLFLVKT-PECTDAGIISVAEKCHKLRKLHI 215
GL L L + Q + + +S L+VL L + P+ D+ + +V+ CH LR+L +
Sbjct: 79 GLTNLSLSRCQQNMNNLMISLAHKFTKLQVLTLRQNIPQLEDSAVEAVSNYCHDLRELDL 138
Query: 216 DGWRTNRIGDHGLMAVARGCPDLQELVLIGV-NPTVQSLRMLGEHCRSLERLALCGC--- 271
R+ R+ D L A+ARGCP L +L + G N + +L L HC++ + L LCGC
Sbjct: 139 S--RSFRLSDRSLYALARGCPQLTKLNISGCSNFSDTALTYLTFHCKNFKCLNLCGCGKA 196
Query: 272 ------------------------ETVGDPEIICLAERCAALKKLCIKGCP-VSDRGMWA 306
E V D + LA C L+ L + GC ++D + A
Sbjct: 197 ATDRALQAIARNCGQLQSLNLGWCEDVTDKGVTSLASGCPDLRALDLCGCVLITDESVIA 256
Query: 307 LNGGCPSLVKVKLKRCRGVSYECIENLKVVRGGSFSISLDIVLERDAGGAIENGGQEAGQ 366
L GCP L + L C+ ++ + +L R S D V R + E+G
Sbjct: 257 LATGCPHLRSLGLYYCQNITDRAMYSLANSRVKSKRRRWDSV--RSSSSKEEDGLANLNI 314
Query: 367 VQITELT 373
Q T LT
Sbjct: 315 SQCTALT 321
>Os01g0881900 Leucine-rich repeat, cysteine-containing containing protein
Length = 379
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 59/178 (33%), Positives = 91/178 (51%), Gaps = 8/178 (4%)
Query: 159 GLVELHLEKLQ--VGDRGLSAVSACANLEVLFLVK-TPECTDAGIISVAEKCHKLRKLHI 215
G+ L L Q + D +S L+VL L + P+ D+ + +VA CH LR+L +
Sbjct: 79 GVTNLSLSWCQAHMNDLVMSLAQKFTKLQVLSLRQIKPQLEDSAVEAVANNCHDLRELDL 138
Query: 216 DGWRTNRIGDHGLMAVARGCPDLQELVLIGV-NPTVQSLRMLGEHCRSLERLALCGC-ET 273
R+ R+ D L A+A GCP L L + G N + +L L C++L+ L LCGC
Sbjct: 139 S--RSFRLSDRSLYALAHGCPHLTRLNISGCSNFSDAALAYLSSQCKNLKCLNLCGCVRA 196
Query: 274 VGDPEIICLAERCAALKKLCIKGC-PVSDRGMWALNGGCPSLVKVKLKRCRGVSYECI 330
V D + +A C L+ L + C V+D+G+ +L GCP L + L C ++ E +
Sbjct: 197 VSDRALQAIACNCGQLQSLNLGWCDSVTDKGVTSLASGCPELRALDLCGCVLITDESV 254
>Os12g0108500 Cyclin-like F-box domain containing protein
Length = 677
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 124/273 (45%), Gaps = 10/273 (3%)
Query: 52 IRKLSVASCSFGPKAFVAVLRSCPLLEDLSVKRLRGLPDXXXXXXXXXXXXLFPPASSLR 111
++KL + C F ++ +SC L +LS+ + G+ D L L
Sbjct: 317 LQKLKLDGCQFMDDGLKSIGKSCVSLRELSLSKCSGVTDTDLSFVVPRLKNLL----KLD 372
Query: 112 SVCLKDLYSALCFVPLVASSPNLRSLKILRCSGSWDLPLEVIAARVPGLVELHLEKLQVG 171
C + + + + + S P+L SL++ CS L++I R L EL L +
Sbjct: 373 VTCCRKI-TDVSLAAITTSCPSLISLRMESCSLVSSKGLQLIGRRCTHLEELDLTDTDLD 431
Query: 172 DRGLSAVSACANLEVLFLVKTPECTDAGIISVAEKCHKLRKLHIDGWRTNRIGDHGLMAV 231
D GL A+S C+ L L + TD G+ V++ C LR ID +R+ I D G+ +
Sbjct: 432 DEGLKALSGCSKLSSLKIGICLRITDEGLRHVSKSCPDLRD--IDLYRSGAISDEGVTHI 489
Query: 232 ARGCPDLQELVLIGVNPTVQ-SLRMLGEHCRSLERLALCGCETVGDPEIICLAERCAALK 290
A+GCP L+ + + SLR L + C L L + GC V + +A C L
Sbjct: 490 AQGCPMLESINMSYCTKLTDCSLRSLSK-CIKLNTLEIRGCPMVSSAGLSEIATGCRLLS 548
Query: 291 KLCIKGC-PVSDRGMWALNGGCPSLVKVKLKRC 322
KL IK C ++D GM L+ +L ++ L C
Sbjct: 549 KLDIKKCFEINDMGMIFLSQFSHNLRQINLSYC 581
>Os12g0552700 Leucine-rich repeat, cysteine-containing subtype containing protein
Length = 362
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 66/220 (30%), Positives = 100/220 (45%), Gaps = 18/220 (8%)
Query: 137 LKILRCSGSWDLPLEVIAARVPGLVELHLEKLQVGDRGLSAVSACANLEVLFLVKTPECT 196
L++ CS + LE IA P L E+ L V D L ++ C+ L VL L +
Sbjct: 95 LRLESCSSISEKGLEQIATSCPNLKEIDLTDCGVNDAALQHLAKCSELLVLKLGLCSSIS 154
Query: 197 DAGIISVAEKCHKLRKLHIDGWRTNRIGDHGLMAVARGCPDLQELVLIGVNPTVQS-LRM 255
D G+ ++ C KL + +D +R N I D GL A+A GC ++ L L N S L
Sbjct: 155 DKGLAFISSSCGKL--IELDLYRCNSITDDGLAALANGCKKIKMLNLCYCNKITDSGLGH 212
Query: 256 LG--EHCRSLERLALCGCETVGDPEIICLAERCAALKKLCIKGC-PVSDRGMWALNGGCP 312
LG E +LE L +G + A C L ++ +K C V D G+WAL
Sbjct: 213 LGSLEELTNLELRCLVRITGIGISSV---AIGCKNLIEIDLKRCYSVDDAGLWALARYAL 269
Query: 313 SLVKVKLKRCRGV---------SYECIENLKVVRGGSFSI 343
+L ++ + C+ S C++++K+V SI
Sbjct: 270 NLRQLTISYCQVTGLGLCHLLSSLRCLQDVKMVHLSWVSI 309
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.321 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,208,358
Number of extensions: 517489
Number of successful extensions: 1561
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1525
Number of HSP's successfully gapped: 11
Length of query: 415
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 312
Effective length of database: 11,657,759
Effective search space: 3637220808
Effective search space used: 3637220808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 157 (65.1 bits)