Os04g0505700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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Os04g0505700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine-rich repeat, cysteine-containing subtype containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.28 | 0.405 | 7.41 | 0.324 | 1.05 | 1.07 | -0.503 | -1.1 | -0.037 | 8.88 | 26.72 | 91 | -- | -- |
| 76.24 | 0.407 | 7.41 | 0.233 | 1.02 | 1.12 | -0.419 | -- | -0.0375 | 8.85 | 26.36 | 152 | -- | -- |
| 74.93 | 0.403 | 7.41 | 0.291 | 1.03 | 1.09 | -- | -0.957 | -0.0406 | 8.93 | 26.7 | 115 | -- | -- |
| 76.25 | 0.407 | 7.42 | 0.133 | 1.04 | 1.14 | -- | -- | -0.0771 | 8.82 | 25.94 | 135 | -- | -- |
| 111.35 | 0.491 | 7.41 | 0.574 | -- | 1.61 | -- | -1.66 | 0.0641 | -- | 30.59 | 567 | -- | -- |
| 94.1 | 0.455 | 7.48 | -0.138 | 1.07 | -- | -0.572 | -- | -0.327 | 7.87 | -- | -- | -- | -- |
| 95.03 | 0.457 | 7.48 | -0.152 | 1.07 | -- | -- | -- | -0.325 | 7.94 | -- | -- | -- | -- |
| 113.96 | 0.497 | 7.45 | 0.317 | -- | 1.55 | -- | -- | -0.0307 | -- | 29.91 | 600 | -- | -- |
| 76.66 | 0.408 | 7.43 | -- | 1.03 | 1.09 | -- | -- | -0.109 | 8.76 | 25.83 | 141 | -- | -- |
| 156.93 | 0.585 | 7.51 | -0.141 | -- | -- | -- | -- | -0.311 | -- | -- | -- | -- | -- |
| 95.64 | 0.457 | 7.48 | -- | 1.06 | -- | -- | -- | -0.309 | 7.95 | -- | -- | -- | -- |
| 115.41 | 0.5 | 7.45 | -- | -- | 1.51 | -- | -- | -0.0473 | -- | 29.9 | 570 | -- | -- |
| 157.45 | 0.586 | 7.51 | -- | -- | -- | -- | -- | -0.296 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.03 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 21 |
| 2 | 70.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 18 |
| 3 | 70.21 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 27 | 71.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 31 | 71.90 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 15 |
| 43 | 72.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 11 |
| 64 | 72.76 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 68 | 72.89 | radiation | 20 | 14400 | < th | dose independent | rect. | 1 | 5 |
| 78 | 72.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 12 |
| 105 | 73.21 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 8 |
| 108 | 73.25 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 11 |
| 117 | 73.38 | temperature | 20 | 270 | > th | dose dependent | sin | 11 | NA |
| 124 | 73.43 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 133 | 73.50 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 17 |
| 157 | 73.65 | temperature | 25 | 720 | < th | dose independent | sin | 19 | NA |
| 184 | 73.82 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 19 |
| 246 | 74.08 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 16 |
| 277 | 74.24 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 295 | 74.35 | temperature | 20 | 720 | > th | dose dependent | sin | 15 | NA |
| 305 | 74.40 | temperature | 25 | 720 | > th | dose independent | sin | 18 | NA |
| 335 | 74.54 | temperature | 30 | 270 | < th | dose dependent | sin | 10 | NA |
| 344 | 74.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 13 |
| 359 | 74.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 6 |
| 407 | 74.88 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 9 |
| 417 | 74.91 | temperature | 25 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 443 | 75.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 14 | 10 |
| 458 | 75.08 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 460 | 75.09 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 465 | 75.11 | temperature | 30 | 720 | < th | dose dependent | sin | 17 | NA |
| 477 | 75.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 17 |
| 490 | 75.22 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 7 |
| 494 | 75.22 | temperature | 25 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 505 | 75.25 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 512 | 75.28 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 577 | 75.47 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 19 |
| 599 | 75.56 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 21 |
| 614 | 75.60 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 21 |
| 653 | 75.69 | temperature | 25 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 684 | 75.79 | temperature | 25 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 703 | 75.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 21 | 6 |
| 724 | 75.92 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 21 |
| 750 | 75.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 765 | 76.02 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 830 | 76.19 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 17 |
| 868 | 76.26 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 21 |
| 903 | 76.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 19 |
| 939 | 76.40 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 940 | 76.40 | radiation | 20 | 14400 | < th | dose independent | rect. | 19 | 11 |
| 969 | 76.46 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |