BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0502300 Os04g0502300|AK120520
         (160 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0502300  Similar to 40S ribosomal protein S11                297   3e-81
Os07g0565000  Similar to 40S ribosomal protein S11                265   2e-71
Os04g0613600  Ribosomal protein S17 family protein                265   2e-71
Os04g0613500  Similar to 40S ribosomal protein S11                128   1e-30
Os08g0207000  Similar to 40S ribosomal protein S11                102   1e-22

>Os04g0502300 Similar to 40S ribosomal protein S11
          Length = 160

 Score =  297 bits (760), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 146/160 (91%), Positives = 146/160 (91%)

Query: 1   MAEQTERAFLKQPKVFLCXXXXXXXXXXXXXXNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTERAFLKQPKVFLC              NRFWKNIGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTERAFLKQPKVFLCPKKTTKGKKPGKGGNRFWKNIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTAA 160
           GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTAA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTAA 160



>Os07g0565000 Similar to 40S ribosomal protein S11
          Length = 161

 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/146 (87%), Positives = 131/146 (89%)

Query: 1   MAEQTERAFLKQPKVFLCXXXXXXXXXXXXXXNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL               NRFWK+IGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDHVIIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146



>Os04g0613600 Ribosomal protein S17 family protein
          Length = 161

 Score =  265 bits (676), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 128/146 (87%), Positives = 131/146 (89%)

Query: 1   MAEQTERAFLKQPKVFLCXXXXXXXXXXXXXXNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL               NRFWK+IGLGFKTPREAIEGTYIDKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146
           GDHVIIGQCRPLSKTVRFNVLKVIPA
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPA 146



>Os04g0613500 Similar to 40S ribosomal protein S11
          Length = 80

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 65/80 (81%)

Query: 1  MAEQTERAFLKQPKVFLCXXXXXXXXXXXXXXNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
          MAEQTE+AFLKQPKVFL               NRFWK+IGLGFKTPREAIEGTYIDKKCP
Sbjct: 1  MAEQTEKAFLKQPKVFLSSKKSGKGKKPGKGGNRFWKSIGLGFKTPREAIEGTYIDKKCP 60

Query: 61 FTGTVSIRGRIIAGTCHSAK 80
          FTGTVSIRGRIIAGTCHSAK
Sbjct: 61 FTGTVSIRGRIIAGTCHSAK 80



>Os08g0207000 Similar to 40S ribosomal protein S11
          Length = 55

 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 52/56 (92%), Gaps = 1/56 (1%)

Query: 105 HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTAA 160
           HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS +G GKK F AA
Sbjct: 1   HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGS-TGGGKKAFIAA 55



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.325    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,727,179
Number of extensions: 171197
Number of successful extensions: 396
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 5
Length of query: 160
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 67
Effective length of database: 12,179,899
Effective search space: 816053233
Effective search space used: 816053233
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)