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Os08g0207000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to 40S ribosomal protein S11.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0217) R2 : 0.00123
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0343 (0.0458) R2dN8 : 0.00159 R2N8 : 0.00123
σ : 0.41
deviance : 76.98
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
46.91 0.319 12.2 0.334 0.617 -0.274 0.367 -0.76 0.0849 16.7 40 10 -- --
47.85 0.322 12.2 0.343 0.612 -0.295 0.483 -- 0.0837 16.7 40.17 14 -- --
47.24 0.32 12.2 0.339 0.621 -0.272 -- -0.801 0.0836 16.7 39.5 10 -- --
48.44 0.324 12.2 0.347 0.613 -0.31 -- -- 0.0868 16.7 40.09 14 -- --
66.32 0.379 12.2 0.285 -- -0.371 -- -0.554 0.0496 -- 34.09 15 -- --
50.25 0.332 12.2 0.354 0.652 -- 0.479 -- 0.086 16.2 -- -- -- --
50.89 0.334 12.2 0.358 0.655 -- -- -- 0.0886 16.2 -- -- -- --
61.32 0.365 12.2 0.227 -- -0.674 -- -- -0.0343 -- 20.09 476 -- --
51.63 0.335 12.2 -- 0.606 -0.308 -- -- 0.048 16.8 40.64 14 -- --
74.07 0.402 12.2 0.332 -- -- -- -- 0.0712 -- -- -- -- --
54.28 0.345 12.2 -- 0.648 -- -- -- 0.0487 16.3 -- -- -- --
52.56 0.338 12.2 -- -- -0.665 -- -- 0.0284 -- 0.02 534 -- --
76.98 0.41 12.2 -- -- -- -- -- 0.0343 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 42.87 temperature 10.0 43200 > th dose independent rect. 10 5
3 43.45 temperature 10.0 10 > th dose dependent rect. 9 18
4 43.48 temperature 10.0 43200 > th dose independent rect. 10 3
11 44.15 atmosphere 1005.0 10 > th dose dependent rect. 3 6
12 44.16 temperature 20.0 10 > th dose independent rect. 9 18
14 44.20 temperature 15.0 10 > th dose dependent rect. 20 7
21 44.33 temperature 10.0 10 > th dose dependent rect. 3 6
25 44.36 precipitation 0.1 10 < th dose independent rect. 3 6
26 44.36 precipitation 0.1 10 < th dose dependent rect. 3 6
28 44.37 wind 5.0 30 < th dose independent rect. 3 6
32 44.40 precipitation 0.1 10 < th dose independent rect. 9 18
33 44.40 precipitation 0.1 10 < th dose dependent rect. 9 18
37 44.45 humidity 90.0 10 < th dose independent rect. 2 7
40 44.46 temperature 20.0 10 > th dose independent rect. 20 7
41 44.46 temperature 10.0 270 > th dose dependent rect. 9 1
55 44.53 atmosphere 995.0 10 > th dose independent rect. 9 18
58 44.54 temperature 10.0 10 > th dose dependent rect. 9 5
71 44.58 temperature 10.0 10 > th dose independent rect. 3 6
73 44.58 temperature 30.0 10 < th dose independent rect. 3 6
74 44.58 humidity 50.0 10 > th dose independent rect. 3 6
76 44.58 atmosphere 995.0 10 > th dose independent rect. 3 6
77 44.58 atmosphere 1015.0 10 < th dose independent rect. 3 6
106 44.67 atmosphere 1005.0 270 > th dose dependent rect. 4 1
114 44.70 temperature 10.0 1440 > th dose independent rect. 4 6
117 44.70 atmosphere 995.0 1440 > th dose independent rect. 4 6
118 44.70 atmosphere 1015.0 1440 < th dose independent rect. 4 6
119 44.70 temperature 10.0 1440 > th dose independent rect. 10 18
122 44.71 temperature 25.0 10 > th dose independent rect. 1 8
124 44.72 radiation 1.0 10 > th dose independent rect. 9 5
126 44.72 wind 9.0 30 < th dose independent rect. 9 18
133 44.75 temperature 10.0 10 > th dose independent rect. 9 5
135 44.75 atmosphere 995.0 10 > th dose independent rect. 9 5
136 44.75 atmosphere 1015.0 10 < th dose independent rect. 9 5
137 44.75 precipitation 0.1 10 < th dose independent rect. 9 5
140 44.75 temperature 10.0 10 > th dose independent rect. 14 19
141 44.75 precipitation 0.1 10 < th dose dependent rect. 9 5
146 44.76 wind 9.0 10 < th dose dependent rect. 3 6
152 44.77 radiation 40.0 10 < th dose independent rect. 4 16
155 44.79 temperature 10.0 1440 > th dose independent rect. 10 5
158 44.79 radiation 40.0 30 < th dose independent rect. 3 6
168 44.79 temperature 10.0 1440 > th dose independent rect. 15 19
192 44.81 atmosphere 1015.0 10 < th dose independent rect. 9 18
193 44.81 radiation 40.0 10 < th dose independent rect. 12 21
196 44.82 wind 9.0 30 < th dose independent rect. 14 19
201 44.85 humidity 50.0 30 > th dose independent rect. 9 18
209 44.88 humidity 50.0 270 > th dose independent rect. 9 1
210 44.89 wind 1.0 30 > th dose independent rect. 9 5
211 44.89 humidity 50.0 30 > th dose independent rect. 9 5
215 44.91 wind 9.0 30 < th dose independent rect. 9 5
227 44.93 temperature 10.0 270 > th dose independent rect. 9 1
228 44.93 atmosphere 995.0 270 > th dose independent rect. 9 1
229 44.93 atmosphere 1015.0 270 < th dose independent rect. 9 1
230 44.93 precipitation 0.1 270 < th dose independent rect. 9 1
231 44.93 radiation 40.0 10 < th dose independent rect. 14 19
232 44.93 temperature 10.0 270 > th dose independent rect. 10 23
233 44.93 precipitation 0.1 270 < th dose dependent rect. 9 1
235 44.94 wind 9.0 270 < th dose independent rect. 9 1
262 44.98 wind 1.0 30 > th dose independent rect. 2 7
263 44.98 precipitation 0.1 10 < th dose independent rect. 14 19
266 44.98 precipitation 0.1 10 < th dose dependent rect. 14 19
273 44.99 atmosphere 1000.0 10 > th dose independent rect. 20 8
281 45.00 temperature 10.0 10 > th dose dependent rect. 9 3
289 45.03 radiation 1.0 270 > th dose independent rect. 9 1
294 45.04 wind 3.0 4320 > th dose independent rect. 8 1
296 45.05 wind 3.0 4320 < th dose independent rect. 8 1
314 45.07 wind 9.0 270 < th dose independent rect. 10 23
315 45.07 atmosphere 1005.0 270 > th dose dependent rect. 2 3
330 45.10 wind 5.0 270 < th dose independent rect. 3 2
335 45.11 wind 1.0 270 > th dose independent rect. 9 1
364 45.18 humidity 90.0 10 < th dose independent rect. 9 5
396 45.24 precipitation 0.1 270 < th dose independent rect. 3 2
401 45.24 precipitation 0.1 270 < th dose dependent rect. 3 2
455 45.31 wind 1.0 270 > th dose independent rect. 3 2
462 45.32 atmosphere 995.0 10 > th dose independent rect. 14 19
464 45.32 wind 5.0 4320 < th dose dependent rect. 8 1
484 45.35 humidity 50.0 10 > th dose independent rect. 14 19
487 45.36 radiation 1.0 10 > th dose independent rect. 9 3
520 45.40 radiation 10.0 270 < th dose independent rect. 17 9
522 45.41 wind 1.0 30 > th dose independent rect. 9 3
526 45.41 atmosphere 1000.0 270 > th dose independent rect. 18 8
541 45.44 temperature 10.0 10 > th dose independent rect. 9 3
543 45.44 atmosphere 995.0 10 > th dose independent rect. 9 3
544 45.44 atmosphere 1015.0 10 < th dose independent rect. 9 3
545 45.44 precipitation 0.1 10 < th dose independent rect. 9 3
549 45.44 wind 1.0 30 > th dose independent rect. 9 18
550 45.44 temperature 10.0 10 > th dose independent rect. 12 21
552 45.44 precipitation 0.1 10 < th dose dependent rect. 9 3
557 45.45 radiation 1.0 270 < th dose dependent rect. 3 2
561 45.46 atmosphere 1000.0 270 > th dose independent rect. 19 16
570 45.47 precipitation 0.1 270 < th dose independent rect. 2 15
576 45.47 precipitation 0.1 270 < th dose dependent rect. 2 15
578 45.48 temperature 10.0 270 > th dose independent rect. 3 2
580 45.48 temperature 30.0 270 < th dose independent rect. 3 2
581 45.48 humidity 50.0 270 > th dose independent rect. 3 2
585 45.48 atmosphere 995.0 270 > th dose independent rect. 3 2
586 45.48 atmosphere 1010.0 270 < th dose independent rect. 3 2
588 45.48 radiation 20.0 270 < th dose independent rect. 3 2
591 45.48 atmosphere 1005.0 10 > th dose independent rect. 3 6
594 45.48 wind 9.0 10 < th dose independent rect. 12 21
595 45.48 temperature 10.0 270 > th dose independent rect. 5 22
596 45.48 precipitation 0.1 270 < th dose independent rect. 10 22
600 45.48 precipitation 0.1 270 < th dose dependent rect. 10 22
611 45.49 radiation 20.0 270 < th dose dependent rect. 3 2
619 45.50 temperature 10.0 1440 > th dose independent rect. 10 3
622 45.50 atmosphere 995.0 1440 > th dose independent rect. 10 3
623 45.50 temperature 10.0 1440 > th dose independent rect. 13 21
636 45.51 radiation 1.0 270 < th dose independent rect. 3 2
656 45.53 wind 3.0 4320 > th dose independent rect. 6 3
659 45.53 radiation 40.0 10 < th dose independent rect. 12 8
673 45.55 wind 9.0 10 < th dose independent rect. 9 3
680 45.55 atmosphere 1000.0 10 > th dose independent rect. 20 16
688 45.56 wind 5.0 270 < th dose independent rect. 23 8
690 45.56 wind 9.0 270 < th dose dependent rect. 9 1
707 45.57 temperature 10.0 30 > th dose dependent rect. 20 18
713 45.60 humidity 50.0 30 > th dose independent rect. 9 3
723 45.61 humidity 50.0 270 > th dose independent rect. 17 9
729 45.61 temperature 10.0 30 > th dose dependent rect. 20 16
730 45.62 wind 3.0 4320 < th dose independent rect. 6 3
734 45.62 atmosphere 1015.0 10 < th dose independent rect. 14 19
736 45.62 precipitation 0.1 10 < th dose independent rect. 12 21
737 45.62 radiation 30.0 270 < th dose dependent rect. 17 9
739 45.62 precipitation 0.1 10 < th dose dependent rect. 12 21
746 45.63 wind 9.0 270 < th dose independent rect. 2 15
750 45.64 wind 9.0 14400 < th dose independent rect. 23 4
757 45.65 temperature 10.0 270 > th dose independent rect. 17 9
761 45.65 temperature 10.0 270 > th dose independent rect. 2 15
762 45.65 atmosphere 1015.0 270 < th dose independent rect. 2 15
769 45.66 temperature 10.0 43200 > th dose independent rect. 10 1
773 45.66 wind 9.0 10 < th dose dependent rect. 14 19
775 45.67 humidity 50.0 14400 > th dose independent rect. 19 9
788 45.68 wind 9.0 270 < th dose independent rect. 17 9
798 45.69 humidity 50.0 270 > th dose independent rect. 5 22
814 45.71 radiation 1.0 270 > th dose dependent rect. 9 1
823 45.73 temperature 30.0 270 < th dose independent rect. 17 9
836 45.74 wind 9.0 270 < th dose independent rect. 5 22
837 45.74 wind 1.0 4320 > th dose dependent rect. 8 1
847 45.75 radiation 40.0 10 < th dose independent rect. 23 21
864 45.76 radiation 30.0 90 < th dose independent rect. 23 10
865 45.76 radiation 10.0 30 > th dose independent rect. 15 18
879 45.78 precipitation 0.1 1440 < th dose independent rect. 10 3
881 45.78 radiation 10.0 90 > th dose independent rect. 17 15
885 45.78 precipitation 0.1 1440 < th dose dependent rect. 10 3
890 45.78 temperature 10.0 270 > th dose dependent rect. 6 6
914 45.80 wind 9.0 270 < th dose dependent rect. 3 2
920 45.81 radiation 10.0 90 > th dose independent rect. 6 2
944 45.81 radiation 30.0 43200 < th dose dependent rect. 21 7
951 45.82 atmosphere 1010.0 90 < th dose independent rect. 20 7
955 45.82 temperature 10.0 270 > th dose dependent rect. 3 2
956 45.82 radiation 1.0 10 > th dose dependent rect. 9 3
972 45.83 precipitation 0.1 270 < th dose independent rect. 5 22
977 45.83 precipitation 0.1 270 < th dose dependent rect. 5 22