BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0207000 Os08g0207000|AK058705
         (55 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G23740.1  | chr5:8008251-8009330 REVERSE LENGTH=160            101   9e-23
AT3G48930.1  | chr3:18141017-18142189 REVERSE LENGTH=161           98   8e-22
AT4G30800.1  | chr4:15001216-15002392 FORWARD LENGTH=160           97   1e-21

>AT5G23740.1 | chr5:8008251-8009330 REVERSE LENGTH=160
          Length = 159

 Score =  101 bits (251), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 46/52 (88%), Positives = 50/52 (96%)

Query: 1   HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAF 52
           HSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAG++  GKKAF
Sbjct: 105 HSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAF 156



>AT3G48930.1 | chr3:18141017-18142189 REVERSE LENGTH=161
          Length = 160

 Score = 98.2 bits (243), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 50/53 (94%), Gaps = 1/53 (1%)

Query: 1   HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGG-GKKAF 52
           HSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNV+KVIPAGS+   GKKAF
Sbjct: 105 HSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAF 157



>AT4G30800.1 | chr4:15001216-15002392 FORWARD LENGTH=160
          Length = 159

 Score = 97.4 bits (241), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/52 (86%), Positives = 48/52 (92%)

Query: 1   HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAF 52
           HSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNV+KVIPAGS+  GKKAF
Sbjct: 105 HSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAF 156



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,264,066
Number of extensions: 38483
Number of successful extensions: 56
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 56
Number of HSP's successfully gapped: 3
Length of query: 55
Length of database: 11,106,569
Length adjustment: 28
Effective length of query: 27
Effective length of database: 10,338,921
Effective search space: 279150867
Effective search space used: 279150867
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 104 (44.7 bits)