BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0207000 Os08g0207000|AK058705
         (55 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0207000  Similar to 40S ribosomal protein S11                112   7e-26
Os04g0502300  Similar to 40S ribosomal protein S11                102   7e-23
Os07g0565000  Similar to 40S ribosomal protein S11                 90   4e-19
Os04g0613600  Ribosomal protein S17 family protein                 90   4e-19

>Os08g0207000 Similar to 40S ribosomal protein S11
          Length = 55

 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/55 (100%), Positives = 55/55 (100%)

Query: 1  HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIAA 55
          HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIAA
Sbjct: 1  HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIAA 55



>Os04g0502300 Similar to 40S ribosomal protein S11
          Length = 160

 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 52/56 (92%), Gaps = 1/56 (1%)

Query: 1   HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGS-TGGGKKAFIAA 55
           HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS +G GKK F AA
Sbjct: 105 HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTAA 160



>Os07g0565000 Similar to 40S ribosomal protein S11
          Length = 161

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/42 (95%), Positives = 42/42 (100%)

Query: 1   HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPA 42
           HSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPA
Sbjct: 105 HSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPA 146



>Os04g0613600 Ribosomal protein S17 family protein
          Length = 161

 Score = 89.7 bits (221), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/42 (95%), Positives = 42/42 (100%)

Query: 1   HSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPA 42
           HSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPA
Sbjct: 105 HSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPA 146



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,140,431
Number of extensions: 66178
Number of successful extensions: 98
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 4
Length of query: 55
Length of database: 17,035,801
Length adjustment: 28
Effective length of query: 27
Effective length of database: 15,573,809
Effective search space: 420492843
Effective search space used: 420492843
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)