Os04g0502300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S11.
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Os04g0502300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S11.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.57 | 0.38 | 10.8 | 1.08 | 0.723 | -0.604 | 0.275 | 0.6 | 0.0507 | 23.3 | 19.9 | 3023 | -- | -- |
| 66.08 | 0.379 | 10.8 | 1.11 | 0.723 | -0.701 | 0.243 | -- | 0.0712 | 23.3 | 19.41 | 4412 | -- | -- |
| 65.89 | 0.378 | 10.8 | 1.07 | 0.721 | -0.604 | -- | 0.608 | 0.0472 | 23.3 | 19.9 | 2985 | -- | -- |
| 66.26 | 0.379 | 10.8 | 1.08 | 0.727 | -0.808 | -- | -- | 0.0485 | 23.3 | 19.36 | 4563 | -- | -- |
| 96.86 | 0.458 | 10.8 | 1.03 | -- | -0.627 | -- | 0.632 | 0.00655 | -- | 20.68 | 3691 | -- | -- |
| 75.36 | 0.407 | 10.8 | 1.57 | 0.725 | -- | 0.312 | -- | 0.247 | 23.4 | -- | -- | -- | -- |
| 75.78 | 0.408 | 10.8 | 1.55 | 0.724 | -- | -- | -- | 0.246 | 23.4 | -- | -- | -- | -- |
| 96.89 | 0.458 | 10.8 | 1.08 | -- | -0.883 | -- | -- | 0.0321 | -- | 19.6 | 3736 | -- | -- |
| 70.17 | 0.39 | 10.9 | -- | 0.707 | -1.35 | -- | -- | -0.233 | 23.3 | 18.1 | 47520 | -- | -- |
| 108.6 | 0.487 | 10.7 | 1.57 | -- | -- | -- | -- | 0.253 | -- | -- | -- | -- | -- |
| 139.37 | 0.552 | 10.8 | -- | 0.74 | -- | -- | -- | 0.0729 | 23.5 | -- | -- | -- | -- |
| 101.43 | 0.469 | 10.9 | -- | -- | -1.38 | -- | -- | -0.236 | -- | 18.05 | 47520 | -- | -- |
| 173.78 | 0.615 | 10.8 | -- | -- | -- | -- | -- | 0.0787 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.44 | wind | 1 | 14400 | < th | dose independent | rect. | 22 | 4 |
| 4 | 62.92 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 4 |
| 7 | 63.17 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 8 | 63.20 | wind | 1 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 10 | 63.25 | wind | 1 | 14400 | < th | dose dependent | rect. | 19 | 13 |
| 13 | 63.32 | wind | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 20 | 63.38 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 21 | 63.39 | temperature | 20 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 22 | 63.41 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 25 | 63.45 | humidity | 50 | 43200 | < th | dose dependent | rect. | 3 | 7 |
| 42 | 63.56 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 46 | 63.62 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 49 | 63.66 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 90 | 63.90 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 96 | 63.93 | wind | 1 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 97 | 63.93 | wind | 1 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 101 | 63.95 | wind | 1 | 14400 | > th | dose independent | sin | 12 | NA |
| 109 | 63.98 | wind | 1 | 14400 | < th | dose independent | sin | 12 | NA |
| 130 | 64.05 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 7 | 8 |
| 143 | 64.08 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 151 | 64.11 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 169 | 64.15 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 190 | 64.18 | wind | 1 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 220 | 64.22 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 229 | 64.24 | atmosphere | 1010 | 14400 | > th | dose independent | sin | 2 | NA |
| 242 | 64.25 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 6 | 17 |
| 263 | 64.27 | wind | 1 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 273 | 64.28 | atmosphere | 1010 | 14400 | < th | dose independent | sin | 1 | NA |
| 285 | 64.28 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 20 | 19 |
| 300 | 64.29 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 357 | 64.33 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 12 |
| 466 | 64.37 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 538 | 64.40 | atmosphere | 1010 | 14400 | < th | dose independent | no | NA | NA |
| 562 | 64.40 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 567 | 64.41 | atmosphere | 1010 | 14400 | > th | dose independent | no | NA | NA |
| 642 | 64.44 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 20 | 14 |
| 690 | 64.46 | atmosphere | 1010 | 14400 | < th | dose independent | rect. | 20 | 14 |
| 760 | 64.49 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 12 |
| 932 | 64.57 | atmosphere | 1010 | 14400 | > th | dose independent | rect. | 11 | 18 |