BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0502300 Os04g0502300|AK120520
         (160 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48930.1  | chr3:18141017-18142189 REVERSE LENGTH=161          273   2e-74
AT5G23740.1  | chr5:8008251-8009330 REVERSE LENGTH=160            269   5e-73
AT4G30800.1  | chr4:15001216-15002392 FORWARD LENGTH=160          264   1e-71

>AT3G48930.1 | chr3:18141017-18142189 REVERSE LENGTH=161
          Length = 160

 Score =  273 bits (699), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 137/159 (86%)

Query: 1   MAEQTERAFLKQPKVFLCXXXXXXXXXXXXXXNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL               NRFWKNIGLGFKTPREAI+G Y+DKKCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYVDKKCP 60

Query: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTA 159
           GDH+IIGQCRPLSKTVRFNVLKVIPAGS S  GKK FT 
Sbjct: 121 GDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTG 159



>AT5G23740.1 | chr5:8008251-8009330 REVERSE LENGTH=160
          Length = 159

 Score =  269 bits (687), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 131/159 (82%), Positives = 136/159 (85%), Gaps = 1/159 (0%)

Query: 1   MAEQTERAFLKQPKVFLCXXXXXXXXXXXXXXNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL               NRFWKNIGLGFKTPREAI+G YID KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKISGKGKRPGKGGNRFWKNIGLGFKTPREAIDGAYIDSKCP 60

Query: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI+AGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTA 159
           GDHVIIGQCRPLSKTVRFNVLKVIPAG+ S  GKK FT 
Sbjct: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGA-SAFGKKAFTG 158



>AT4G30800.1 | chr4:15001216-15002392 FORWARD LENGTH=160
          Length = 159

 Score =  264 bits (675), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 129/159 (81%), Positives = 136/159 (85%), Gaps = 1/159 (0%)

Query: 1   MAEQTERAFLKQPKVFLCXXXXXXXXXXXXXXNRFWKNIGLGFKTPREAIEGTYIDKKCP 60
           MAEQTE+AFLKQPKVFL               NRFWKNIGLGFKTPREAIEGTYID+KCP
Sbjct: 1   MAEQTEKAFLKQPKVFLSSKKSGKGKRPGKGGNRFWKNIGLGFKTPREAIEGTYIDQKCP 60

Query: 61  FTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKE 120
           FTGTVSIRGRI++GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKE
Sbjct: 61  FTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKE 120

Query: 121 GDHVIIGQCRPLSKTVRFNVLKVIPAGSKSGAGKKVFTA 159
           GD V IGQCRPLSKTVRFNVLKVIPAGS S  GKK FT 
Sbjct: 121 GDRVTIGQCRPLSKTVRFNVLKVIPAGS-SSIGKKAFTG 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.139    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,079,618
Number of extensions: 114161
Number of successful extensions: 245
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 3
Length of query: 160
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 69
Effective length of database: 8,611,713
Effective search space: 594208197
Effective search space used: 594208197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 107 (45.8 bits)