Os04g0613500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 40S ribosomal protein S11.
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Os04g0613500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 40S ribosomal protein S11.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.06 | 0.382 | 13.3 | 0.404 | 0.61 | 0.439 | 0.688 | -0.679 | -0.0087 | 17.8 | 19.93 | 2908 | -- | -- |
| 66.79 | 0.381 | 13.3 | 0.528 | 0.619 | 0.526 | 0.708 | -- | 0.0287 | 17.7 | 20 | 2884 | -- | -- |
| 67.19 | 0.382 | 13.3 | 0.392 | 0.618 | 0.438 | -- | -0.729 | -0.0108 | 17.7 | 20 | 2864 | -- | -- |
| 67.99 | 0.384 | 13.3 | 0.518 | 0.619 | 0.569 | -- | -- | 0.0249 | 17.7 | 19.8 | 2868 | -- | -- |
| 86.69 | 0.434 | 13.3 | 0.399 | -- | 0.421 | -- | -0.661 | -0.012 | -- | 20 | 2984 | -- | -- |
| 72.67 | 0.4 | 13.2 | 0.819 | 0.593 | -- | 0.803 | -- | 0.155 | 17.8 | -- | -- | -- | -- |
| 74.24 | 0.403 | 13.2 | 0.814 | 0.598 | -- | -- | -- | 0.159 | 17.7 | -- | -- | -- | -- |
| 87.35 | 0.435 | 13.2 | 0.489 | -- | 0.542 | -- | -- | 0.00828 | -- | 19.92 | 3150 | -- | -- |
| 69.85 | 0.389 | 13.3 | -- | 0.62 | 0.744 | -- | -- | -0.0969 | 17.6 | 19.4 | 18599 | -- | -- |
| 92.77 | 0.45 | 13.2 | 0.795 | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
| 91.68 | 0.448 | 13.2 | -- | 0.585 | -- | -- | -- | 0.0679 | 17.8 | -- | -- | -- | -- |
| 88 | 0.437 | 13.3 | -- | -- | 0.802 | -- | -- | -0.116 | -- | 19.1 | 18899 | -- | -- |
| 109.44 | 0.488 | 13.2 | -- | -- | -- | -- | -- | 0.0562 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 9 | 61.12 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 11 | 61.25 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 20 | 61.69 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 29 | 61.90 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 65 | 62.50 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 66 | 62.53 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 105 | 62.95 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 151 | 63.27 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 168 | 63.37 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 3 |
| 172 | 63.40 | humidity | 90.0 | 10 | < th | dose independent | rect. | 2 | 7 |
| 212 | 63.58 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 213 | 63.59 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 220 | 63.61 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 227 | 63.65 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 251 | 63.73 | temperature | 20.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 262 | 63.80 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 266 | 63.83 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 16 |
| 273 | 63.87 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 282 | 63.92 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 295 | 63.98 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 297 | 63.99 | atmosphere | 1005.0 | 10 | > th | dose independent | rect. | 3 | 6 |
| 299 | 63.99 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 6 |
| 301 | 63.99 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 304 | 64.00 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 18 |
| 305 | 64.00 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 307 | 64.00 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 18 |
| 312 | 64.02 | radiation | 40.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 322 | 64.07 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 332 | 64.10 | wind | 9.0 | 90 | < th | dose independent | rect. | 8 | 19 |
| 333 | 64.11 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 16 |
| 363 | 64.20 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 18 |
| 369 | 64.23 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 379 | 64.26 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 381 | 64.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 382 | 64.26 | humidity | 50.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 385 | 64.26 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 387 | 64.26 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 388 | 64.26 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 19 |
| 444 | 64.37 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 5 |
| 454 | 64.39 | humidity | 50.0 | 30 | > th | dose independent | rect. | 9 | 18 |
| 458 | 64.41 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 471 | 64.43 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 473 | 64.43 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 479 | 64.45 | radiation | 1.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 480 | 64.45 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 482 | 64.46 | temperature | 25.0 | 270 | > th | dose dependent | sin | 8 | NA |
| 492 | 64.48 | wind | 1.0 | 30 | > th | dose independent | rect. | 9 | 5 |
| 515 | 64.50 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 16 |
| 543 | 64.55 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 549 | 64.55 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 5 |
| 551 | 64.55 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 552 | 64.55 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 9 | 5 |
| 555 | 64.55 | temperature | 10.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 556 | 64.55 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 567 | 64.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 570 | 64.58 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 571 | 64.58 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 6 |
| 572 | 64.58 | temperature | 20.0 | 270 | > th | dose independent | rect. | 19 | 17 |
| 573 | 64.58 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 18 |
| 584 | 64.60 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 587 | 64.60 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 609 | 64.64 | humidity | 50.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 610 | 64.64 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 616 | 64.65 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 619 | 64.65 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 639 | 64.68 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 5 |
| 650 | 64.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 22 |
| 651 | 64.70 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 656 | 64.71 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 18 |
| 664 | 64.72 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 671 | 64.74 | wind | 9.0 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 672 | 64.74 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 689 | 64.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 1 |
| 690 | 64.76 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 691 | 64.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 694 | 64.77 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 12 |
| 695 | 64.77 | wind | 9.0 | 30 | < th | dose independent | rect. | 14 | 19 |
| 696 | 64.77 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 14 | 19 |
| 697 | 64.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 698 | 64.78 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 699 | 64.78 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 700 | 64.78 | temperature | 10.0 | 270 | > th | dose independent | rect. | 10 | 23 |
| 704 | 64.79 | wind | 9.0 | 270 | < th | dose independent | rect. | 9 | 1 |
| 714 | 64.81 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 731 | 64.84 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 733 | 64.85 | wind | 1.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 745 | 64.86 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 14 |
| 747 | 64.86 | temperature | 25.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 754 | 64.87 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |
| 756 | 64.87 | radiation | 30.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 771 | 64.89 | radiation | 1.0 | 90 | > th | dose dependent | rect. | 8 | 6 |
| 774 | 64.90 | radiation | 40.0 | 270 | > th | dose independent | rect. | 9 | 1 |
| 776 | 64.90 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 9 | 18 |
| 787 | 64.92 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 14 | 19 |
| 805 | 64.92 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 16 | 16 |
| 809 | 64.92 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 14 | 19 |
| 817 | 64.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 819 | 64.94 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 820 | 64.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 823 | 64.94 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 2 |
| 825 | 64.94 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 827 | 64.94 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 835 | 64.94 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 22 |
| 842 | 64.95 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 855 | 64.96 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 875 | 64.99 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 1 | 6 |
| 880 | 64.99 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 917 | 65.01 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 13 |
| 932 | 65.02 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 11 |
| 935 | 65.03 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 938 | 65.03 | humidity | 90.0 | 10 | < th | dose independent | rect. | 9 | 5 |
| 946 | 65.04 | wind | 1.0 | 90 | > th | dose independent | rect. | 3 | 5 |
| 954 | 65.04 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 9 | 5 |
| 967 | 65.05 | wind | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 978 | 65.06 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 983 | 65.06 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 998 | 65.08 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 1 |