BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0480900 Os04g0480900|AK109889
(554 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0480900 Glycoside hydrolase, family 5 protein 1009 0.0
AK109830 419 e-117
Os02g0596200 Glycoside hydrolase, family 5 protein 363 e-100
Os04g0481000 Conserved hypothetical protein 110 2e-24
>Os04g0480900 Glycoside hydrolase, family 5 protein
Length = 554
Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 491/520 (94%), Positives = 491/520 (94%)
Query: 35 RWVVGADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWPTYXXX 94
RWVVGADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWPTY
Sbjct: 35 RWVVGADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWPTYLAT 94
Query: 95 XXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDNQ 154
PLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDNQ
Sbjct: 95 NATLANLPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDNQ 154
Query: 155 MTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSKNVS 214
MTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSKNVS
Sbjct: 155 MTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSKNVS 214
Query: 215 LWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGFSD 274
LWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGFSD
Sbjct: 215 LWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGFSD 274
Query: 275 DGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCFLTV 334
DGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCFLTV
Sbjct: 275 DGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCFLTV 334
Query: 335 AAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQGPG 394
AAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQGPG
Sbjct: 335 AAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQGPG 394
Query: 395 LPNSQQPYNVIFHPLSGLCVLVKSSEALELGPCDKSNAWNYTKGYELILKQTGQCLQAKS 454
LPNSQQPYNVIFHPLSGLCVLVKSSEALELGPCDKSNAWNYTKGYELILKQTGQCLQAKS
Sbjct: 395 LPNSQQPYNVIFHPLSGLCVLVKSSEALELGPCDKSNAWNYTKGYELILKQTGQCLQAKS 454
Query: 455 VGENAXXXXXXXXXXXXXXXXXXXGMHVSTELTNNGTRVCLEASPDGNITTNQCKCLTVD 514
VGENA GMHVSTELTNNGTRVCLEASPDGNITTNQCKCLTVD
Sbjct: 455 VGENAKLGTSCSKSSSKWKLLSNSGMHVSTELTNNGTRVCLEASPDGNITTNQCKCLTVD 514
Query: 515 PNCNPESQWFKIILSSKHIPGGTSILQLPSHGPWSPTSSS 554
PNCNPESQWFKIILSSKHIPGGTSILQLPSHGPWSPTSSS
Sbjct: 515 PNCNPESQWFKIILSSKHIPGGTSILQLPSHGPWSPTSSS 554
>AK109830
Length = 413
Score = 419 bits (1078), Expect = e-117, Method: Compositional matrix adjust.
Identities = 199/381 (52%), Positives = 256/381 (67%), Gaps = 8/381 (2%)
Query: 35 RWVVG--ADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWPTYX 92
RW+V A GRRVKLAC NW SHLEPV EGL + + I+ +VA++G NCVRLT+P
Sbjct: 32 RWIVDDEAGGRRVKLACVNWPSHLEPVVTEGLGMQPVDAISKKVASLGFNCVRLTYPIAL 91
Query: 93 XXXXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILD 152
+R SL G+ +VAGV NNPGLLDL LI+ F+ VV +L ++ +MVILD
Sbjct: 92 ATNASLSSLTVRRSLLAHGLAGAVAGVEANNPGLLDLTLIESFRAVVDSLGESGVMVILD 151
Query: 153 NQMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSK- 211
N ++ PGWCC+++DGNGFFGD++F P+ W++GL AMA +F NVVGMSLRNELRG +
Sbjct: 152 NHVSRPGWCCADDDGNGFFGDRHFDPDAWVRGLGAMAALFAGVPNVVGMSLRNELRGPRQ 211
Query: 212 NVSLWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFT----GKLVFEQ 267
N W+RYMQ+GAE VHAANP LVI+ GL +D L FL + ++F GKLVFE
Sbjct: 212 NADDWYRYMQMGAEAVHAANPAALVIMGGLGYDTDLSFLAARPVDVSFAAAERGKLVFEL 271
Query: 268 HWYGFSDDGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRY 327
HWY F+D W S++ N+ CG V + ++G FLL G+PLF SEFG D G D+RY
Sbjct: 272 HWYSFADARAWESEDANEVCGRVARGVARRGGFLLDAGFPLFLSEFGADTRGGSRKDDRY 331
Query: 328 LTCFLTVAAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQ 387
L C VAAE+DLDWA+WALQGSY +R+G DE YG+L W W RN + + RI +LQ
Sbjct: 332 LPCAAAVAAELDLDWALWALQGSYALRQGVAGADEVYGVLDWSWSKPRNATALSRIQSLQ 391
Query: 388 SPFQGPGLPNSQQPYNVIFHP 408
P +GPG + +PY V+FHP
Sbjct: 392 RPLRGPGY-DEARPYTVLFHP 411
>Os02g0596200 Glycoside hydrolase, family 5 protein
Length = 449
Score = 363 bits (933), Expect = e-100, Method: Compositional matrix adjust.
Identities = 174/326 (53%), Positives = 222/326 (68%), Gaps = 7/326 (2%)
Query: 35 RWVVG--ADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWPTYX 92
RW+V A GRRVKLAC NW SHLEPV EGL + + I+ +VA++G NCVRLT+P
Sbjct: 32 RWIVDDEAGGRRVKLACVNWPSHLEPVVTEGLGMQPVDAISKKVASLGFNCVRLTYPIAL 91
Query: 93 XXXXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILD 152
+R SL G+ +VAGV NNPGLLDL LI+ F+ VV +L ++ +MVILD
Sbjct: 92 ATNASLSSLTVRRSLLAHGLAGAVAGVEANNPGLLDLTLIESFRAVVDSLGESGVMVILD 151
Query: 153 NQMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSK- 211
N ++ PGWCC+++DGNGFFGD++F P+ W++GL AMA +F NVVGMSLRNELRG +
Sbjct: 152 NHVSRPGWCCADDDGNGFFGDRHFDPDAWVRGLGAMAALFAGVPNVVGMSLRNELRGPRQ 211
Query: 212 NVSLWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFT----GKLVFEQ 267
N W+RYMQ+GAE VHAANP LVI+ GL +D L FL + ++F GKLVFE
Sbjct: 212 NADDWYRYMQMGAEAVHAANPAALVIMGGLGYDTDLSFLAARPVDVSFAAAERGKLVFEL 271
Query: 268 HWYGFSDDGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRY 327
HWY F+D W S++ N+ CG V + ++G FLL G+PLF SEFG D G D+RY
Sbjct: 272 HWYSFADARAWESEDANEVCGRVARGVARRGGFLLDAGFPLFLSEFGADTRGGSRKDDRY 331
Query: 328 LTCFLTVAAEMDLDWAIWALQGSYYI 353
L C VAAE+DLDWA+WALQGSY +
Sbjct: 332 LPCAAAVAAELDLDWALWALQGSYAL 357
>Os04g0481000 Conserved hypothetical protein
Length = 100
Score = 110 bits (275), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 63/84 (75%), Gaps = 1/84 (1%)
Query: 136 QEVVSALAKNNIMVILDNQMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNT 195
Q VVS+L +N +MVILDN ++ PGWCC NDGNGFFGD YF P+ W+ GL+ MATMF
Sbjct: 17 QAVVSSLGENGVMVILDNHVSKPGWCCGNNDGNGFFGDAYFDPDVWVDGLTKMATMFAAV 76
Query: 196 KNVVGMSLRNELRGSK-NVSLWFR 218
+VV MSLRNELRG + N + W++
Sbjct: 77 PSVVAMSLRNELRGPRQNSADWYK 100
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.136 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,642,917
Number of extensions: 713047
Number of successful extensions: 1207
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1201
Number of HSP's successfully gapped: 4
Length of query: 554
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 448
Effective length of database: 11,501,117
Effective search space: 5152500416
Effective search space used: 5152500416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)