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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0480900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 5 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.86 (0.0352) R2 : 0.487
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.37 (0.117) R2dE : 0.499 R2E : 0.468
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.226 (0.0752) R2dN8 : 0.0187 R2N8 : -0.0118
σ : 0.659
deviance : 200.32
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 16.07
memory length : 300
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.43
open length of G : 2.88

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
180.44 0.631 3.86 0.226 0.39 2.53 -1.71 5.88 -0.251 4.42 19 255 3.18 3.95
191.1 0.644 3.87 -0.244 0.524 2.32 -0.864 -- -0.347 4.44 20.59 299 3.92 2.27
187.02 0.637 3.86 0.257 0.446 2.6 -- 6.16 -0.251 4.86 20.27 237 3.3 3.93
192.38 0.646 3.88 -0.214 0.559 2.29 -- -- -0.347 5.17 20.57 292 3.97 2.27
194.11 0.649 3.85 0.218 -- 2.87 -- 5.99 -0.252 -- 19.22 240 3.22 3.98
277.66 0.781 3.78 -0.115 1.47 -- -0.169 -- -0.0283 6.21 -- -- -- --
277.73 0.78 3.78 -0.117 1.47 -- -- -- -0.0276 6.23 -- -- -- --
201.88 0.662 3.89 -0.241 -- 2.66 -- -- -0.383 -- 20.05 306 3.57 2.58
193.71 0.648 3.87 -- 0.569 2.3 -- -- -0.324 5.24 20.6 289 3.96 2.28
390.39 0.923 3.8 -0.0763 -- -- -- -- 0.00469 -- -- -- -- --
278.08 0.78 3.77 -- 1.47 -- -- -- -0.0146 6.24 -- -- -- --
200.32 0.659 3.86 -- -- 2.37 -- -- -0.226 -- 16.07 300 3.43 2.88
390.55 0.922 3.8 -- -- -- -- -- 0.0132 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 181.46 temperature 20.0 270 > th dose dependent rect. 3 4
2 182.01 temperature 20.0 270 > th dose dependent rect. 4 2
6 189.85 temperature 20.0 270 > th dose independent rect. 3 4
8 190.72 temperature 20.0 270 > th dose dependent rect. 2 6
10 192.51 temperature 20.0 270 > th dose independent rect. 4 2
20 196.77 wind 3.0 270 < th dose dependent rect. 4 3
25 198.63 temperature 20.0 10 > th dose dependent rect. 5 3
28 199.30 temperature 20.0 270 > th dose independent rect. 2 6
34 200.72 atmosphere 1015.0 270 < th dose dependent rect. 3 4
53 204.52 wind 3.0 90 < th dose independent rect. 4 5
57 205.43 atmosphere 1015.0 270 < th dose dependent rect. 4 2
75 207.15 humidity 80.0 270 > th dose independent rect. 3 4
78 207.41 wind 3.0 270 < th dose independent rect. 4 2
80 207.61 humidity 70.0 270 > th dose dependent rect. 3 4
85 208.08 radiation 1.0 270 > th dose independent rect. 5 1
113 209.78 radiation 1.0 30 < th dose dependent sin 10 NA
116 210.00 wind 5.0 10 < th dose dependent rect. 5 4
118 210.23 wind 3.0 10 < th dose independent rect. 5 4
131 211.18 radiation 1.0 30 < th dose independent sin 10 NA
133 211.41 humidity 70.0 270 > th dose dependent rect. 4 2
140 211.88 humidity 50.0 90 > th dose dependent rect. 4 6
144 211.98 atmosphere 1015.0 10 < th dose dependent rect. 5 3
151 212.20 humidity 80.0 270 > th dose independent rect. 4 2
167 212.77 precipitation 0.1 270 < th dose independent rect. 3 4
168 212.77 precipitation 0.1 270 < th dose dependent rect. 3 4
170 212.81 atmosphere 1010.0 270 < th dose independent rect. 3 4
172 212.95 radiation 1.0 30 > th dose independent sin 10 NA
187 213.37 radiation 20.0 270 < th dose independent rect. 3 4
188 213.38 temperature 20.0 10 > th dose independent rect. 5 3
211 214.00 temperature 10.0 270 > th dose independent rect. 3 4
213 214.00 temperature 30.0 270 < th dose independent rect. 3 4
214 214.00 humidity 50.0 270 > th dose independent rect. 3 4
216 214.00 atmosphere 995.0 270 > th dose independent rect. 3 4
219 214.00 temperature 10.0 270 > th dose independent rect. 7 20
224 214.11 wind 9.0 270 < th dose independent rect. 7 20
246 214.94 humidity 50.0 10 > th dose dependent rect. 5 5
253 215.17 radiation 10.0 270 < th dose independent rect. 4 2
254 215.20 radiation 40.0 270 < th dose dependent rect. 3 4
262 215.36 temperature 20.0 10 > th dose independent rect. 5 5
296 216.30 temperature 20.0 270 > th dose independent rect. 3 17
298 216.33 wind 9.0 90 < th dose independent rect. 9 19
300 216.47 atmosphere 1010.0 270 < th dose independent rect. 4 2
309 216.53 temperature 10.0 90 > th dose independent rect. 9 19
320 216.80 precipitation 0.1 270 < th dose independent rect. 4 2
322 216.80 precipitation 0.1 270 < th dose dependent rect. 4 2
353 217.39 temperature 10.0 270 > th dose independent rect. 4 2
355 217.39 temperature 30.0 270 < th dose independent rect. 4 2
356 217.39 humidity 50.0 270 > th dose independent rect. 4 2
359 217.39 atmosphere 995.0 270 > th dose independent rect. 4 2
364 217.39 temperature 10.0 270 > th dose independent rect. 6 22
380 217.72 wind 1.0 90 > th dose independent rect. 23 6
389 217.87 wind 9.0 270 < th dose independent rect. 6 22
398 218.10 precipitation 0.1 270 < th dose independent rect. 7 20
399 218.10 precipitation 0.1 270 < th dose dependent rect. 7 20
405 218.16 atmosphere 995.0 90 > th dose independent rect. 9 19
417 218.44 radiation 40.0 270 < th dose dependent rect. 4 2
443 219.00 radiation 40.0 10 < th dose independent rect. 5 3
458 219.21 atmosphere 995.0 270 > th dose independent rect. 7 20
480 219.45 wind 3.0 90 < th dose dependent rect. 4 9
499 219.96 precipitation 0.1 10 < th dose independent rect. 5 3
500 219.96 precipitation 0.1 10 < th dose dependent rect. 5 3
503 220.10 atmosphere 995.0 10 > th dose independent rect. 8 21
505 220.11 radiation 40.0 270 < th dose dependent rect. 2 6
510 220.21 wind 9.0 10 < th dose independent rect. 8 21
513 220.22 temperature 10.0 10 > th dose independent rect. 5 3
515 220.22 temperature 30.0 10 < th dose independent rect. 5 3
516 220.22 humidity 50.0 10 > th dose independent rect. 5 3
518 220.22 atmosphere 995.0 10 > th dose independent rect. 5 3
519 220.22 atmosphere 1015.0 10 < th dose independent rect. 5 3
520 220.22 temperature 10.0 10 > th dose independent rect. 8 21
523 220.24 wind 1.0 90 > th dose independent rect. 7 22
526 220.40 radiation 1.0 10 > th dose dependent rect. 5 2
540 220.47 radiation 1.0 10 > th dose independent rect. 5 3
579 220.81 wind 3.0 90 < th dose dependent rect. 4 11
584 220.90 temperature 10.0 90 > th dose dependent rect. 23 5
628 221.22 wind 9.0 10 < th dose independent rect. 10 19
635 221.29 temperature 10.0 10 > th dose dependent rect. 5 18
641 221.41 temperature 20.0 10 > th dose independent rect. 5 17
659 221.69 wind 3.0 90 < th dose dependent rect. 4 14
694 222.03 precipitation 0.1 10 < th dose independent rect. 5 5
697 222.03 precipitation 0.1 10 < th dose dependent rect. 5 5
701 222.07 temperature 10.0 10 > th dose independent rect. 5 5
703 222.07 humidity 50.0 10 > th dose independent rect. 5 5
704 222.07 atmosphere 995.0 10 > th dose independent rect. 5 5
705 222.07 atmosphere 1015.0 10 < th dose independent rect. 5 5
706 222.07 temperature 10.0 10 > th dose independent rect. 10 19
709 222.11 temperature 10.0 10 > th dose dependent rect. 23 6
711 222.16 precipitation 0.1 270 < th dose independent rect. 17 14
713 222.16 precipitation 0.1 270 < th dose dependent rect. 17 14
721 222.25 atmosphere 995.0 10 > th dose independent rect. 10 19
756 222.71 wind 1.0 90 > th dose independent rect. 21 8
777 222.85 atmosphere 1000.0 90 > th dose independent rect. 23 5
807 223.05 precipitation 0.1 90 < th dose independent rect. 4 19
809 223.05 precipitation 0.1 90 < th dose dependent rect. 4 19
823 223.12 temperature 10.0 90 > th dose independent rect. 23 5
824 223.12 temperature 30.0 90 < th dose independent rect. 23 5
825 223.12 humidity 50.0 90 > th dose independent rect. 23 5
830 223.12 radiation 1.0 90 < th dose independent rect. 23 5
842 223.12 temperature 10.0 90 > th dose independent rect. 4 19
843 223.12 radiation 1.0 90 < th dose dependent rect. 23 5
848 223.13 wind 9.0 90 < th dose independent rect. 23 5
851 223.16 radiation 20.0 270 < th dose independent rect. 17 14
864 223.32 temperature 10.0 90 > th dose dependent rect. 4 19
886 223.54 atmosphere 1015.0 90 < th dose independent rect. 4 19
898 223.61 precipitation 0.1 10 < th dose independent rect. 8 21
899 223.61 precipitation 0.1 10 < th dose dependent rect. 8 21
948 223.96 atmosphere 1000.0 270 > th dose independent rect. 23 2
958 224.08 wind 9.0 90 < th dose independent rect. 4 19
965 224.13 radiation 1.0 10 < th dose dependent rect. 22 8
966 224.14 precipitation 0.1 270 < th dose independent rect. 1 22
967 224.14 precipitation 0.1 270 < th dose dependent rect. 1 22
968 224.15 wind 9.0 270 < th dose independent rect. 17 14
969 224.16 temperature 10.0 270 > th dose independent rect. 7 10
970 224.16 atmosphere 1015.0 270 < th dose independent rect. 7 10
971 224.16 temperature 10.0 270 > th dose independent rect. 17 14
973 224.17 wind 9.0 270 < th dose independent rect. 7 10
977 224.21 temperature 10.0 270 > th dose dependent rect. 23 2
978 224.22 precipitation 0.1 90 < th dose independent rect. 23 5
980 224.22 precipitation 0.1 90 < th dose dependent rect. 23 5