BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0480900 Os04g0480900|AK109889
(554 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G13130.1 | chr1:4474726-4477820 FORWARD LENGTH=553 494 e-140
AT3G26140.1 | chr3:9559742-9563070 REVERSE LENGTH=509 475 e-134
AT3G26130.1 | chr3:9553708-9555611 REVERSE LENGTH=552 472 e-133
AT5G17500.1 | chr5:5767379-5769719 FORWARD LENGTH=527 459 e-129
AT5G16700.1 | chr5:5480763-5483045 FORWARD LENGTH=489 404 e-113
>AT1G13130.1 | chr1:4474726-4477820 FORWARD LENGTH=553
Length = 552
Score = 494 bits (1271), Expect = e-140, Method: Compositional matrix adjust.
Identities = 241/502 (48%), Positives = 322/502 (64%), Gaps = 9/502 (1%)
Query: 35 RWVVGADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWP-TYXX 93
RW+V +G RVKL CANW SHL+PV AEGLS++ + +A ++ MG NCVRLTWP
Sbjct: 40 RWIVDENGLRVKLVCANWPSHLQPVVAEGLSKQPVDAVAKKIVEMGFNCVRLTWPLDLMT 99
Query: 94 XXXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDN 153
+R S + LG+ + + G + NNP ++DLPLI+ ++ VV+ L N++MVILDN
Sbjct: 100 NETLANNVTVRQSFQSLGLNDDIVGFQTNNPSIIDLPLIEAYKTVVTTLGNNDVMVILDN 159
Query: 154 QMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSK-N 212
+T PGWCC+ +DGNGFFGD++F P W+ L MA F NVVGMSLRNELRG K N
Sbjct: 160 HLTKPGWCCANDDGNGFFGDQFFDPTVWVAALKKMAATFNGVSNVVGMSLRNELRGPKQN 219
Query: 213 VSLWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGF 272
V+ WF+YMQ GAE VH+AN VLVILSGL+FD L F+ ++L+FTGKLVFE HWY F
Sbjct: 220 VNDWFKYMQQGAEAVHSANNKVLVILSGLSFDADLSFVRSRPVKLSFTGKLVFELHWYSF 279
Query: 273 SDDGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCFL 332
SD +W + N ND CG V++ I G +LL QG+PLF SEFG D G + DNRY C
Sbjct: 280 SDGNSWAANNPNDICGRVLNRIGNGGGYLLNQGFPLFLSEFGIDERGVNTNDNRYFGCLT 339
Query: 333 TVAAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQG 392
AAE D+DW++WAL GSYY+R+G + +E YG+L DW + RN SF+++I+ LQSP QG
Sbjct: 340 GWAAENDVDWSLWALTGSYYLRQGKVGMNEYYGVLDSDWISVRNSSFLQKISFLQSPLQG 399
Query: 393 PGLPNSQQPYNVIFHPLSGLCVL--VKSSEALELGPCDKSNAWNYTKGYELILKQTGQCL 450
PG P + YN++FHPL+GLC++ + + L LGPC+ S W+YTK L +K CL
Sbjct: 400 PG-PRTDA-YNLVFHPLTGLCIVRSLDDPKMLTLGPCNSSEPWSYTKK-ALRIKDQQLCL 456
Query: 451 QAKSVGENAXXXXXXXXXXXXX-XXXXXXGMHVSTELTNNGTRVCLEASPDGNITTNQCK 509
Q+ MH+++ T+N T +CL+ N+ N CK
Sbjct: 457 QSNGPKNPVTMTRTSCSTSGSKWQTISASRMHLAST-TSNKTSLCLDVDTANNVVANACK 515
Query: 510 CLTVDPNCNPESQWFKIILSSK 531
CL+ D +C P SQWFKII +++
Sbjct: 516 CLSKDKSCEPMSQWFKIIKATR 537
>AT3G26140.1 | chr3:9559742-9563070 REVERSE LENGTH=509
Length = 508
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 237/506 (46%), Positives = 319/506 (63%), Gaps = 16/506 (3%)
Query: 35 RWVVGADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWP-TYXX 93
RW++ G+RVKLAC NW SHL+PV AEGLS++ + D+A ++ AMG NCVR TWP
Sbjct: 10 RWIIDEKGQRVKLACVNWPSHLQPVVAEGLSKQSVDDLAKKIMAMGFNCVRFTWPLDLAT 69
Query: 94 XXXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDN 153
+R S + LG+ + ++G NP ++DLPLI+ +++VV+ L NN+MVILDN
Sbjct: 70 NETLANNVTVRQSFQSLGLNDDISGFETKNPSMIDLPLIEAYKKVVAKLGNNNVMVILDN 129
Query: 154 QMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSK-N 212
+T PGWCC NDGNGFFGD +F P W+ GL+ +A F+ NVVGMSLRNELRG K N
Sbjct: 130 HVTKPGWCCGYNDGNGFFGDTFFDPTTWIAGLTKIAMTFKGATNVVGMSLRNELRGPKQN 189
Query: 213 VSLWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGF 272
V WF+YMQ GAE VH ANP VLVILSGL++D L F+ + LTFT KLVFE H Y F
Sbjct: 190 VDDWFKYMQQGAEAVHEANPNVLVILSGLSYDTDLSFVRSRHVNLTFTRKLVFELHRYSF 249
Query: 273 SDDGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCFL 332
++ W S+N N+ACG ++ SI+ G F L+ +P+F SEFG D+ G +V DNRY+ C L
Sbjct: 250 TNTNTWSSKNPNEACGEILKSIENGGGFNLRD-FPVFLSEFGIDLRGKNVNDNRYIGCIL 308
Query: 333 TVAAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQG 392
AAE D+DW+IW LQGSYY+REG + E YG+L DW R+ SF++R++ + SP QG
Sbjct: 309 GWAAENDVDWSIWTLQGSYYLREGVVGMSEFYGILDSDWVRVRSQSFLQRLSLILSPLQG 368
Query: 393 PGLPNSQQPYNVIFHPLSGLCVL--VKSSEALELGPCDKSNAWNYTKGYELILKQTGQCL 450
PG + + YN++FHPL+GLC+L + + LG C++S W+YT L LK CL
Sbjct: 369 PG--SQSKVYNLVFHPLTGLCMLQSILDPTKVTLGLCNESQPWSYTPQNTLTLKDKSLCL 426
Query: 451 QAKSVGENAXXXXXXXXXXXXX----XXXXXXGMHVSTELTNNGTRVCLEASPDGNITTN 506
+ S G NA M ++ + TNN +CL+ N+ +
Sbjct: 427 E--STGPNAPVKLSETSCSSPNLSEWETISASNMLLAAKSTNNS--LCLDVDETNNLMAS 482
Query: 507 QCKCLT-VDPNCNPESQWFKIILSSK 531
CKC+ D +C+P SQWFKI+ SK
Sbjct: 483 NCKCVKGEDSSCDPISQWFKIVKVSK 508
>AT3G26130.1 | chr3:9553708-9555611 REVERSE LENGTH=552
Length = 551
Score = 472 bits (1214), Expect = e-133, Method: Compositional matrix adjust.
Identities = 235/515 (45%), Positives = 324/515 (62%), Gaps = 12/515 (2%)
Query: 35 RWVV--GADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWPTYX 92
RW+V G GRRVKL C NW SHLE AEGLS++ L IA ++ +MG NCVRLTWP Y
Sbjct: 28 RWIVDDGNKGRRVKLTCVNWPSHLETAVAEGLSKQPLDAIAEKIVSMGFNCVRLTWPLYL 87
Query: 93 XX-XXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVIL 151
+R SL + + E+V+G + +NP +LDLPLI FQEVV L K+ +MVIL
Sbjct: 88 ATDESFSAFMTVRQSLRKFRLFEAVSGFQTHNPTILDLPLIKAFQEVVYCLEKHRVMVIL 147
Query: 152 DNQMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRN-TKNVVGMSLRNELRGS 210
DN ++ PGWCCS+NDGNGFFGDK+ P+ W+KGL MA+MF N + NVVGMSLRNELRG
Sbjct: 148 DNHISQPGWCCSDNDGNGFFGDKHLNPQVWIKGLKKMASMFANVSSNVVGMSLRNELRGP 207
Query: 211 K-NVSLWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHW 269
K N+ W++YM+ GAE VH+ NP VLVI+SGLN+ L FL +++F K+VFE HW
Sbjct: 208 KQNIKDWYKYMREGAEAVHSVNPNVLVIVSGLNYATDLSFLRERPFEVSFRRKVVFEIHW 267
Query: 270 YGFSDDGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLT 329
YGF + W N N CG + + K FLL++G PLF SEFG D G + DN++L+
Sbjct: 268 YGFWN--TWEGDNLNKICGKETEKMMKMSGFLLEKGIPLFVSEFGIDQRGNNANDNKFLS 325
Query: 330 CFLTVAAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSP 389
CF+ +AA+ DLDW++W L GSYYIRE ++ DESYG+L ++W + RN + ++ I+A+Q+P
Sbjct: 326 CFMALAADRDLDWSLWTLAGSYYIREKSIGSDESYGVLDFNWSSIRNSTILQMISAIQTP 385
Query: 390 FQGPGLPNSQQPYNVIFHPLSGLCVLVKSSEALELGPCDKSNAWNYTKGYELIL-KQTGQ 448
F G QP ++FHP +GLC++ KS L+LG C++S +W + L L ++
Sbjct: 386 FIGLM---ETQPKKIMFHPSTGLCIVRKSLFQLKLGSCNRSESWRLSSHRVLSLAEEQIL 442
Query: 449 CLQAKSVGENAXXXXXXXXXXXXXXXXXXXGMHVSTELTNNGTRVCLEA-SPDGNITTNQ 507
CL+A G++ + +T NG VCL+ + + NI TN
Sbjct: 443 CLKAYEKGKSVKLRLFFSESYCSKWKLFSDSKMQLSSITKNGFSVCLDVDTENNNIVTNS 502
Query: 508 CKCLTVDPNCNPESQWFKIILSSKHIPGGTSILQL 542
CKCL + +C+P SQWFK++ S++ LQ+
Sbjct: 503 CKCLRGNSSCDPRSQWFKLVTSTRRRSRPKPFLQI 537
>AT5G17500.1 | chr5:5767379-5769719 FORWARD LENGTH=527
Length = 526
Score = 459 bits (1181), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/501 (46%), Positives = 308/501 (61%), Gaps = 15/501 (2%)
Query: 35 RWVVGADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWP-TYXX 93
RW+V G RVKLACANW SHL+PV AEGLS + + I+ ++ MG NCVRLTWP
Sbjct: 33 RWIVNNKGHRVKLACANWPSHLKPVVAEGLSSQPMDSISKKIKDMGFNCVRLTWPLELMI 92
Query: 94 XXXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDN 153
++ S ER G+ + G+ +NP +++ PLI+VFQ VV +L ++++MVILDN
Sbjct: 93 NDTLAFNVTVKQSFERYGLDHELQGIYTHNPYIVNTPLINVFQAVVYSLGRHDVMVILDN 152
Query: 154 QMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSKNV 213
T PGWCCS +D + FFGD F P+ W+ GL MAT+F N KNVVGMSLRNELRG +
Sbjct: 153 HKTVPGWCCSNDDPDAFFGDPKFNPDLWMLGLKKMATIFMNVKNVVGMSLRNELRGYNHT 212
Query: 214 SL-WFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGF 272
S W++YMQ GAE VH +NP VLVILSGLNFD L FL + L+F KLV E HWY F
Sbjct: 213 SKDWYKYMQKGAEAVHTSNPNVLVILSGLNFDADLSFLKDRPVNLSFKKKLVLELHWYSF 272
Query: 273 SD-DGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCF 331
+D G W S N ND C + ++ G F+L QG+PLF SEFG D G + NRY+ C
Sbjct: 273 TDGTGQWKSHNVNDFCSQMFSKERRTGGFVLDQGFPLFLSEFGTDQRGGDLEGNRYMNCM 332
Query: 332 LTVAAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQ 391
L AAE DLDWA+WA+ G YY REG E+YG+L +W N ++++R++ +Q P
Sbjct: 333 LAWAAEKDLDWAVWAVTGVYYFREGKRGVVEAYGMLDANWHNVHNYTYLRRLSVIQPPHT 392
Query: 392 GPGLPNSQQPYNVIFHPLSGLCVLVKS---SEALELGPCDKSNAWNYTKGYELILKQTGQ 448
GPG+ ++ + IFHPL+GLC++ KS L LGPC K W+Y+ G L +++ +
Sbjct: 393 GPGVKHNH--HKKIFHPLTGLCLVRKSHCHESELTLGPCTKDEPWSYSHGGILEIRRGHK 450
Query: 449 -CLQAKS-VGENAXXXXXXXXXXXXXXXXXXXGMHVSTELTNNGTRVCLEASPDGNITTN 506
CL+ ++ VG++ MH+S T++G+ VCL+ D N+ N
Sbjct: 451 SCLEGETAVGKSVKLGRICTKIEQISATK----MHLSFN-TSDGSLVCLDVDSDNNVVAN 505
Query: 507 QCKCLTVDPNCNPESQWFKII 527
C CLT D C P SQWFKI
Sbjct: 506 SCNCLTGDTTCEPASQWFKIF 526
>AT5G16700.1 | chr5:5480763-5483045 FORWARD LENGTH=489
Length = 488
Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust.
Identities = 220/502 (43%), Positives = 292/502 (58%), Gaps = 53/502 (10%)
Query: 35 RWVVGADGRRVKLACANWASHLEPVAAEGLSRRGLGDIAARVAAMGLNCVRLTWP-TYXX 93
RW+V G+RVKLAC NW +HL+P AEGLS++ L I+ ++ +MG NCVRLTWP
Sbjct: 31 RWIVDEKGQRVKLACVNWPAHLQPTVAEGLSKQPLDSISKKIVSMGFNCVRLTWPLDLVT 90
Query: 94 XXXXXXXXPLRASLERLGMPESVAGVRVNNPGLLDLPLIDVFQEVVSALAKNNIMVILDN 153
++ S E L + E V G++ +NP LL LPL + FQEVVS L +N +MVILDN
Sbjct: 91 NDTLALKVTVKQSFESLKLFEDVLGIQTHNPKLLHLPLFNAFQEVVSNLGENGVMVILDN 150
Query: 154 QMTTPGWCCSENDGNGFFGDKYFGPEEWLKGLSAMATMFRNTKNVVGMSLRNELRGSKNV 213
+TTPGWCC +ND + FFG +F P W KGL MAT+FRN +V+GMSLRNE RG+++
Sbjct: 151 HLTTPGWCCGDNDLDAFFGYPHFDPLVWAKGLRKMATLFRNFTHVIGMSLRNEPRGARDY 210
Query: 214 -SLWFRYMQLGAEVVHAANPGVLVILSGLNFDNTLDFLVPNQIQLTFTGKLVFEQHWYGF 272
LWFR+M GAE VHAANP +LVILSG++FD L FL + ++FT KLVFE HWY F
Sbjct: 211 PDLWFRHMPQGAEAVHAANPKLLVILSGIDFDTNLSFLRDRSVNVSFTDKLVFELHWYSF 270
Query: 273 SD-DGNWGSQNQNDACGMVVDSIKKKGLFLLQQGWPLFFSEFGFDMSGTHVADNRYLTCF 331
SD +W N ND C +++ + G FLL +G+PL SEFG D G ++ NRY+ C
Sbjct: 271 SDGRDSWRKHNSNDFCVKIIEKVTHNGGFLLGRGFPLILSEFGTDQRGGDMSGNRYMNCL 330
Query: 332 LTVAAEMDLDWAIWALQGSYYIREGTLAYDESYGLLSWDWCTARNPSFIKRINALQSPFQ 391
+ AAE DLDWA+WAL G YY+R
Sbjct: 331 VAWAAENDLDWAVWALTGDYYLR------------------------------------T 354
Query: 392 GPGL-PNSQQPYNVIFHPLSGLCVLVKSSE---ALELGPCDKSNAWNYTKGYELILKQTG 447
GPGL PN N++FHP +GLCV S+ L LGPC KS+ W + E IL
Sbjct: 355 GPGLRPNK----NLLFHPSTGLCVTNNPSDNIPTLRLGPCPKSDPWTFNPS-EGILWINK 409
Query: 448 QCLQAKS-VGENAXXXXXXXXXXXXXXXXXXXGMHVSTELTNNGTRVCLEASP-DGNITT 505
C++A + VG+ MH+S + T+NG +CL+ D ++
Sbjct: 410 MCVEAPNVVGQKVKLGVGTKCSKLGQISATK--MHLSFK-TSNGLLLCLDVDERDNSVVA 466
Query: 506 NQCKCLTVDPNCNPESQWFKII 527
N+CK LT+D +C+P SQWFK++
Sbjct: 467 NRCKFLTMDASCDPASQWFKVL 488
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.136 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,431,995
Number of extensions: 474335
Number of successful extensions: 875
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 845
Number of HSP's successfully gapped: 6
Length of query: 554
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 450
Effective length of database: 8,255,305
Effective search space: 3714887250
Effective search space used: 3714887250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)