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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0596200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 5 protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.02 (0.044) R2 : 0.00229
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0949 (0.0927) R2dN8 : 0.00296 R2N8 : 0.00229
σ : 0.829
deviance : 315.81
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
305.5 0.821 3.04 0.103 0.404 -0.407 0.887 -0.274 -0.234 5.28 25.26 285 -- --
305.66 0.814 3.05 0.0303 0.406 -0.418 0.745 -- -0.259 5.22 25.25 282 -- --
306.92 0.816 3.05 0.000973 0.414 -0.416 -- 0.108 -0.268 4.88 25.2 282 -- --
306.95 0.816 3.05 0.0305 0.405 -0.407 -- -- -0.259 4.86 25.21 280 -- --
312.62 0.823 3.05 -0.0318 -- -0.226 -- 0.168 -0.231 -- 24.6 272 -- --
313.39 0.83 3.01 0.14 0.0781 -- 0.757 -- -0.0774 6.73 -- -- -- --
314.55 0.831 3.01 0.149 0.108 -- -- -- -0.0808 4.09 -- -- -- --
312.08 0.823 3.04 0.0984 -- -0.205 -- -- -0.174 -- 24.91 256 -- --
306.97 0.816 3.05 -- 0.409 -0.411 -- -- -0.264 4.85 25.22 280 -- --
315.18 0.83 3.02 0.154 -- -- -- -- -0.0779 -- -- -- -- --
315.13 0.83 3.02 -- 0.111 -- -- -- -0.0974 4.07 -- -- -- --
312.33 0.823 3.04 -- -- -0.215 -- -- -0.19 -- 24.97 263 -- --
315.81 0.829 3.02 -- -- -- -- -- -0.0949 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 295.08 wind 1.0 30 < th dose independent rect. 17 1
12 295.08 wind 1.0 30 < th dose dependent rect. 17 1
23 295.35 wind 3.0 90 > th dose independent rect. 2 3
24 296.02 humidity 70.0 90 < th dose independent rect. 17 1
25 296.20 wind 3.0 10 < th dose independent rect. 13 10
57 297.28 humidity 70.0 90 < th dose dependent rect. 17 3
89 298.09 temperature 20.0 10 < th dose dependent rect. 3 1
116 299.25 wind 5.0 30 < th dose dependent rect. 13 10
123 299.47 temperature 20.0 10 < th dose dependent rect. 3 7
127 299.53 temperature 20.0 10 < th dose dependent rect. 3 16
151 299.89 wind 3.0 90 > th dose dependent rect. 3 2
186 300.21 precipitation 0.1 10 < th dose independent rect. 23 23
187 300.21 precipitation 0.1 10 < th dose dependent rect. 23 23
209 300.62 humidity 60.0 10 < th dose independent rect. 14 1
220 300.95 humidity 60.0 10 < th dose independent rect. 12 3
223 301.01 humidity 80.0 10 > th dose dependent rect. 22 1
225 301.15 humidity 50.0 30 > th dose independent rect. 23 23
231 301.40 radiation 10.0 10 > th dose dependent rect. 17 14
233 301.43 temperature 20.0 270 < th dose dependent rect. 3 1
235 301.50 precipitation 0.1 1440 < th dose independent rect. 23 1
236 301.50 precipitation 0.1 1440 < th dose dependent rect. 23 1
241 301.56 wind 3.0 10 < th dose independent rect. 22 1
256 301.70 atmosphere 1010.0 10 < th dose dependent rect. 22 1
258 301.72 wind 5.0 10 < th dose dependent rect. 22 1
265 301.85 humidity 80.0 10 > th dose independent rect. 22 1
269 301.87 atmosphere 1000.0 1440 < th dose dependent rect. 8 1
282 302.05 temperature 30.0 10 < th dose dependent rect. 22 1
283 302.05 radiation 1.0 14400 < th dose dependent rect. 23 1
286 302.11 atmosphere 1000.0 10 > th dose independent rect. 22 1
291 302.22 precipitation 0.1 10 < th dose independent rect. 22 1
293 302.22 precipitation 0.1 10 < th dose dependent rect. 22 1
296 302.28 atmosphere 1000.0 1440 > th dose independent rect. 8 1
302 302.32 humidity 90.0 720 < th dose independent rect. 24 4
307 302.37 wind 1.0 10 > th dose independent rect. 22 1
310 302.37 temperature 10.0 10 > th dose independent rect. 22 1
312 302.37 temperature 30.0 10 < th dose independent rect. 22 1
313 302.37 humidity 50.0 10 > th dose independent rect. 22 1
317 302.37 atmosphere 1010.0 10 < th dose independent rect. 22 1
319 302.37 radiation 1.0 10 < th dose independent rect. 22 1
324 302.37 temperature 10.0 10 > th dose independent rect. 23 23
325 302.37 radiation 1.0 10 < th dose dependent rect. 22 1
338 302.42 wind 3.0 10 < th dose dependent rect. 12 2
344 302.46 atmosphere 995.0 10 > th dose dependent rect. 22 1
387 302.53 temperature 10.0 10 > th dose dependent rect. 22 1
393 302.57 radiation 10.0 10 > th dose dependent rect. 17 1
413 302.66 wind 9.0 1440 < th dose independent rect. 23 1
414 302.66 temperature 10.0 1440 > th dose independent rect. 23 1
417 302.66 temperature 30.0 1440 < th dose independent rect. 23 1
421 302.66 humidity 50.0 1440 > th dose independent rect. 23 1
431 302.66 atmosphere 995.0 1440 > th dose independent rect. 23 1
432 302.66 radiation 1.0 1440 < th dose independent rect. 23 1
452 302.66 temperature 10.0 1440 > th dose independent rect. 24 23
455 302.66 radiation 1.0 1440 < th dose dependent rect. 23 1
472 302.82 humidity 90.0 720 < th dose independent rect. 2 1
473 302.82 atmosphere 1000.0 1440 < th dose independent rect. 8 1
482 302.85 wind 3.0 30 < th dose independent rect. 16 7
488 302.90 humidity 90.0 30 < th dose independent rect. 22 1
493 302.96 wind 1.0 30 > th dose dependent rect. 22 1
526 303.19 humidity 90.0 30 < th dose dependent rect. 22 1
534 303.24 wind 3.0 10 < th dose independent rect. 12 2
562 303.33 wind 9.0 30 < th dose independent rect. 23 23
564 303.34 humidity 90.0 270 < th dose independent rect. 24 8
568 303.42 atmosphere 1005.0 14400 > th dose independent rect. 20 1
573 303.45 temperature 25.0 270 > th dose independent rect. 12 21
583 303.55 wind 1.0 10 < th dose independent rect. 14 4
624 303.76 atmosphere 1005.0 14400 < th dose independent rect. 19 4
629 303.76 atmosphere 995.0 30 > th dose dependent rect. 23 23
630 303.77 atmosphere 1005.0 14400 < th dose independent rect. 20 1
636 303.78 wind 3.0 30 > th dose independent rect. 11 15
653 303.81 humidity 90.0 90 < th dose independent rect. 2 1
663 303.86 atmosphere 1005.0 90 < th dose dependent rect. 13 1
667 303.87 atmosphere 1005.0 10 < th dose dependent rect. 14 1
672 303.90 atmosphere 995.0 10 > th dose independent rect. 23 23
677 303.92 temperature 25.0 270 > th dose independent rect. 12 16
685 303.94 wind 7.0 4320 > th dose dependent rect. 17 3
695 303.96 wind 1.0 270 > th dose dependent rect. 24 8
706 304.02 wind 7.0 4320 > th dose dependent rect. 15 10
710 304.03 wind 3.0 30 > th dose independent rect. 11 13
736 304.05 wind 3.0 10 < th dose dependent rect. 13 6
764 304.09 wind 5.0 4320 > th dose dependent rect. 17 8
785 304.18 wind 7.0 4320 > th dose dependent rect. 15 7
786 304.19 wind 3.0 10 < th dose independent rect. 13 15
797 304.23 wind 7.0 4320 > th dose independent rect. 13 12
814 304.27 temperature 20.0 10 < th dose dependent sin 2 NA
815 304.27 humidity 60.0 1440 > th dose dependent rect. 17 2
817 304.28 wind 3.0 270 < th dose independent rect. 12 8
825 304.31 wind 3.0 10 < th dose independent sin 18 NA
833 304.33 wind 7.0 4320 < th dose independent rect. 13 12
850 304.38 wind 7.0 4320 > th dose independent rect. 17 3
860 304.39 humidity 80.0 720 > th dose dependent rect. 23 7
881 304.43 wind 7.0 4320 > th dose dependent sin 16 NA
888 304.45 wind 7.0 4320 > th dose independent rect. 13 9
909 304.47 wind 7.0 4320 > th dose independent rect. 16 9
920 304.49 temperature 20.0 270 < th dose dependent rect. 1 6
971 304.58 wind 7.0 4320 > th dose independent sin 16 NA
981 304.59 wind 7.0 4320 < th dose independent rect. 13 9