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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0481000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.28 (0.0291) R2 : 0.437
β1 : -0.868 (0.106) R2dD : 0.0854 R2D : 0.0643
β2 : 1.23 (0.0726) R2dC : 0.355 R2C : 0.351
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.168 (0.062) R2dN8 : 0.0121 R2N8 : -0.00263
σ : 0.546
deviance : 135.96
__
_____
C
peak time of C : 20.7
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.91 0.519 4.18 -0.288 1.06 -0.345 -1 10.4 -0.109 21.2 29.9 468 -- --
122.36 0.515 4.28 -1.03 1.06 0.779 -0.825 -- -0.169 21.4 27.6 378 -- --
125.26 0.521 4.19 -0.247 1.08 -0.444 -- 10.8 -0.117 21.1 30.23 450 -- --
125.37 0.521 4.28 -0.974 1.05 0.776 -- -- -0.165 21.5 27.51 374 -- --
185.15 0.634 4.14 -0.238 -- 0.0439 -- 10.7 -0.0765 -- 29.95 576 -- --
134.56 0.544 4.28 -0.89 1.22 -- -0.653 -- -0.168 20.8 -- -- -- --
135.96 0.546 4.28 -0.868 1.23 -- -- -- -0.168 20.7 -- -- -- --
171.21 0.609 4.29 -1.16 -- 1.31 -- -- -0.335 -- 24.2 616 -- --
149.57 0.57 4.25 -- 1.08 0.657 -- -- -0.0589 21.2 28 351 -- --
221.05 0.695 4.25 -0.871 -- -- -- -- -0.178 -- -- -- -- --
155.82 0.584 4.26 -- 1.23 -- -- -- -0.0709 20.6 -- -- -- --
203.54 0.664 4.24 -- -- 1.13 -- -- -0.159 -- 24.5 583 -- --
241.05 0.725 4.23 -- -- -- -- -- -0.0812 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 115.90 temperature 30.0 270 < th dose independent rect. 8 15
5 117.24 temperature 15.0 270 > th dose dependent rect. 12 7
6 117.24 temperature 20.0 10 > th dose dependent rect. 14 8
9 117.36 humidity 50.0 270 > th dose dependent rect. 23 9
15 117.51 humidity 80.0 270 > th dose independent rect. 23 8
21 117.75 humidity 50.0 270 > th dose independent rect. 8 15
25 117.90 temperature 20.0 10 > th dose dependent rect. 14 6
32 118.12 atmosphere 995.0 270 > th dose independent rect. 8 15
43 118.32 temperature 15.0 270 > th dose independent rect. 23 9
48 118.44 atmosphere 1015.0 270 < th dose independent rect. 8 15
51 118.46 temperature 10.0 270 > th dose dependent rect. 2 17
66 118.63 temperature 15.0 270 > th dose independent rect. 12 19
95 119.11 radiation 30.0 270 < th dose independent rect. 23 9
108 119.25 temperature 10.0 270 > th dose dependent rect. 12 19
111 119.29 temperature 15.0 270 > th dose independent rect. 11 21
115 119.33 temperature 10.0 270 > th dose dependent rect. 11 21
127 119.44 temperature 25.0 90 > th dose independent rect. 14 6
129 119.45 radiation 40.0 270 < th dose dependent rect. 23 9
139 119.51 temperature 30.0 270 < th dose independent rect. 23 9
140 119.51 humidity 50.0 270 > th dose independent rect. 23 9
142 119.51 atmosphere 995.0 270 > th dose independent rect. 23 9
143 119.51 temperature 10.0 270 > th dose independent rect. 8 15
147 119.52 wind 9.0 270 < th dose independent rect. 23 9
151 119.56 atmosphere 1015.0 270 < th dose independent rect. 19 17
154 119.57 temperature 25.0 10 > th dose independent rect. 14 6
177 119.77 precipitation 0.1 270 < th dose independent rect. 23 9
179 119.77 precipitation 0.1 270 < th dose dependent rect. 23 9
196 119.89 atmosphere 1015.0 10 < th dose dependent rect. 14 6
200 119.90 atmosphere 1010.0 270 < th dose independent rect. 23 9
215 119.97 temperature 25.0 270 > th dose independent rect. 12 7
230 120.13 temperature 10.0 270 > th dose dependent rect. 23 20
250 120.31 temperature 15.0 10 > th dose independent rect. 14 18
253 120.32 precipitation 0.1 270 < th dose independent rect. 8 15
255 120.32 precipitation 0.1 270 < th dose dependent rect. 8 15
256 120.33 temperature 30.0 270 < th dose independent rect. 16 10
263 120.38 atmosphere 1015.0 270 < th dose dependent rect. 12 7
273 120.41 precipitation 0.1 270 < th dose independent rect. 12 19
276 120.41 precipitation 0.1 270 < th dose dependent rect. 12 19
281 120.45 atmosphere 1015.0 270 < th dose dependent rect. 1 6
296 120.50 temperature 25.0 270 > th dose dependent rect. 12 19
298 120.51 precipitation 0.1 270 < th dose independent rect. 12 7
300 120.51 precipitation 0.1 270 < th dose dependent rect. 12 7
329 120.63 wind 9.0 270 < th dose independent rect. 12 19
339 120.67 humidity 50.0 10 > th dose dependent rect. 24 10
342 120.67 atmosphere 1015.0 10 < th dose dependent rect. 14 18
348 120.70 wind 9.0 270 < th dose independent rect. 8 15
366 120.76 temperature 10.0 270 > th dose independent rect. 7 5
367 120.76 atmosphere 995.0 270 > th dose independent rect. 7 5
368 120.76 atmosphere 1015.0 270 < th dose independent rect. 7 5
376 120.77 temperature 20.0 270 > th dose dependent rect. 15 1
385 120.80 wind 9.0 270 < th dose independent rect. 12 7
387 120.81 precipitation 0.1 270 < th dose independent rect. 7 5
390 120.81 precipitation 0.1 270 < th dose dependent rect. 7 5
392 120.82 atmosphere 995.0 14400 > th dose independent rect. 9 5
412 120.88 atmosphere 1015.0 10 < th dose independent rect. 20 18
431 120.92 humidity 70.0 270 > th dose independent rect. 17 9
442 120.96 atmosphere 1010.0 270 < th dose independent rect. 12 7
450 120.99 temperature 10.0 270 > th dose independent rect. 12 7
453 120.99 temperature 10.0 270 > th dose independent rect. 19 17
454 120.99 atmosphere 995.0 270 > th dose independent rect. 19 17
462 121.01 humidity 50.0 270 > th dose independent rect. 7 5
464 121.02 wind 9.0 270 < th dose independent rect. 7 5
473 121.04 temperature 30.0 270 < th dose independent rect. 16 21
483 121.05 temperature 25.0 10 > th dose dependent rect. 14 17
484 121.06 wind 1.0 270 > th dose independent rect. 7 16
485 121.06 precipitation 0.1 270 < th dose independent rect. 11 21
492 121.06 precipitation 0.1 270 < th dose dependent rect. 11 21
493 121.07 temperature 30.0 270 < th dose independent rect. 7 6
513 121.10 radiation 10.0 4320 < th dose independent rect. 20 9
519 121.11 humidity 50.0 270 > th dose dependent rect. 8 15
521 121.12 radiation 10.0 270 < th dose dependent rect. 16 11
534 121.15 wind 9.0 270 < th dose independent rect. 11 21
575 121.21 wind 1.0 270 > th dose independent rect. 7 5
577 121.22 wind 1.0 270 > th dose independent rect. 12 7
580 121.22 temperature 25.0 270 > th dose dependent sin 18 NA
596 121.25 wind 9.0 270 < th dose independent rect. 19 17
605 121.26 humidity 50.0 270 > th dose dependent rect. 8 3
641 121.32 radiation 1.0 270 > th dose independent rect. 4 9
651 121.32 temperature 10.0 270 > th dose dependent rect. 23 9
667 121.35 radiation 1.0 270 < th dose independent rect. 17 10
704 121.41 humidity 60.0 14400 > th dose independent rect. 20 9
713 121.42 temperature 10.0 270 > th dose independent rect. 8 3
714 121.42 atmosphere 995.0 270 > th dose independent rect. 8 3
715 121.42 atmosphere 1015.0 270 < th dose independent rect. 8 3
720 121.42 temperature 25.0 10 > th dose dependent rect. 14 12
732 121.44 precipitation 0.1 270 < th dose independent rect. 19 17
737 121.44 precipitation 0.1 270 < th dose dependent rect. 19 17
777 121.50 precipitation 0.1 270 < th dose independent rect. 8 3
779 121.50 precipitation 0.1 270 < th dose dependent rect. 8 3
791 121.52 temperature 15.0 270 > th dose dependent sin 20 NA
797 121.53 humidity 50.0 270 > th dose independent rect. 8 3
803 121.54 wind 9.0 270 < th dose independent rect. 8 3
804 121.54 wind 9.0 10 < th dose independent rect. 14 6
826 121.56 temperature 30.0 270 < th dose independent rect. 19 17
854 121.61 precipitation 0.1 10 < th dose independent rect. 14 6
866 121.61 precipitation 0.1 10 < th dose dependent rect. 14 6
890 121.63 temperature 30.0 270 < th dose independent rect. 8 3
909 121.66 humidity 50.0 270 > th dose independent rect. 19 17
940 121.70 radiation 10.0 270 < th dose dependent sin 15 NA
945 121.71 humidity 90.0 270 < th dose independent rect. 12 7
953 121.72 temperature 25.0 90 > th dose dependent sin 15 NA
957 121.73 radiation 1.0 270 > th dose independent rect. 7 5
966 121.74 radiation 40.0 90 < th dose independent rect. 14 18
979 121.77 humidity 80.0 10 > th dose independent rect. 24 11