BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0455800 Os04g0455800|AK120652
(382 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0455800 Similar to Lipoic acid synthetase, mitochondri... 713 0.0
Os01g0769100 Similar to Lipoic acid synthase-like protein 342 3e-94
Os05g0511500 Similar to Lipoic acid synthase-like protein 333 2e-91
AK108293 208 7e-54
>Os04g0455800 Similar to Lipoic acid synthetase, mitochondrial precursor
(Lip-syn) (Lipoate synthase) (mLIP1)
Length = 382
Score = 713 bits (1840), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/382 (91%), Positives = 348/382 (91%)
Query: 1 MHGXXXXXXXXXXXXTYAPSRSISSTPSLLQTLDXXXXXXXXXXXXXGRLAELRQRLQAD 60
MHG TYAPSRSISSTPSLLQTLD GRLAELRQRLQAD
Sbjct: 1 MHGRRHLAASLARALTYAPSRSISSTPSLLQTLDPSTPSPAAAPPTAGRLAELRQRLQAD 60
Query: 61 APSLGDFTYSVEVGTRKKPLPKPKWMKETIPGGAKYAGIKAKLRELKLHTVCEEARCPNL 120
APSLGDFTYSVEVGTRKKPLPKPKWMKETIPGGAKYAGIKAKLRELKLHTVCEEARCPNL
Sbjct: 61 APSLGDFTYSVEVGTRKKPLPKPKWMKETIPGGAKYAGIKAKLRELKLHTVCEEARCPNL 120
Query: 121 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTXXXXXXXXXSNVAQAIASWGLEY 180
GECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRT SNVAQAIASWGLEY
Sbjct: 121 GECWSGGETGTATATIMILGDTCTRGCRFCNVKTSRTPPPPDPDEPSNVAQAIASWGLEY 180
Query: 181 IVITSVDRDDLPDQGSGHFAETVQKLKVLKPEMLIEALVPDFRGDPACVEKVATSGLHVF 240
IVITSVDRDDLPDQGSGHFAETVQKLKVLKPEMLIEALVPDFRGDPACVEKVATSGLHVF
Sbjct: 181 IVITSVDRDDLPDQGSGHFAETVQKLKVLKPEMLIEALVPDFRGDPACVEKVATSGLHVF 240
Query: 241 AHNIETVEELQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTKTSIMLGCGETPDQVISTT 300
AHNIETVEELQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTKTSIMLGCGETPDQVISTT
Sbjct: 241 AHNIETVEELQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTKTSIMLGCGETPDQVISTT 300
Query: 301 EKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSY 360
EKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSY
Sbjct: 301 EKVRAAGVDVMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSY 360
Query: 361 KAGEFYIKAMIEADRAKATTAI 382
KAGEFYIKAMIEADRAKATTAI
Sbjct: 361 KAGEFYIKAMIEADRAKATTAI 382
>Os01g0769100 Similar to Lipoic acid synthase-like protein
Length = 370
Score = 342 bits (876), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 167/308 (54%), Positives = 216/308 (70%), Gaps = 7/308 (2%)
Query: 76 RKKPLPKPKWMKETIPGGAKYAGIKAKLRELKLHTVCEEARCPNLGECWSGGETGT---- 131
R + KP W+++ G KYA ++ + ELKL+TVC EA+CPN+GECW+GG
Sbjct: 59 RDPEVKKPAWLRQRAAQGEKYARLRESIGELKLNTVCVEAQCPNIGECWNGGGGAGGEGD 118
Query: 132 --ATATIMILGDTCTRGCRFCNVKTSRTXXXXXXXXXSNVAQAIASWGLEYIVITSVDRD 189
ATATIM+LGDTCTRGCRFC VKTS N A A+ASWG++Y+V+TSVDRD
Sbjct: 119 GIATATIMVLGDTCTRGCRFCAVKTSNKPPPPDPLEPLNTALAVASWGVDYVVLTSVDRD 178
Query: 190 DLPDQGSGHFAETVQKLKVLKPEMLIEALVPDFRGDPACVEKVATSGLHVFAHNIETVEE 249
DLPD GS HFA+TV+ LK LKP +L+E L DFRGD V +A SGL VFAHNIETV
Sbjct: 179 DLPDGGSSHFAQTVRALKELKPGILVECLTSDFRGDLEAVSALANSGLDVFAHNIETVRS 238
Query: 250 LQRNVRDHRANFKQSIDVLKLAKEYAPAGTLTKTSIMLGCGETPDQVISTTEKVRAAGVD 309
LQR VRD RA + QS+ VLK AK G +TK+SIMLG GET ++V +RA GVD
Sbjct: 239 LQRIVRDPRAGYDQSLAVLKHAKS-CKEGMITKSSIMLGLGETDEEVKQAMIDLRAIGVD 297
Query: 310 VMTFGQYMRPSKRHMPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSYKAGEFYIKA 369
++T GQY++P++RH+ V EYVTPE F+ ++ G +GFRYVASGP+VRSSY+AGE +++
Sbjct: 298 ILTLGQYLQPTERHLTVREYVTPEKFQFWKEYGESVGFRYVASGPLVRSSYRAGELFVQN 357
Query: 370 MIEADRAK 377
++ ++ K
Sbjct: 358 LVRNNKPK 365
>Os05g0511500 Similar to Lipoic acid synthase-like protein
Length = 384
Score = 333 bits (853), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/302 (54%), Positives = 213/302 (70%), Gaps = 7/302 (2%)
Query: 82 KPKWMKETIPGGAKYAGIKAKLRELKLHTVCEEARCPNLGECWSGGETGT------ATAT 135
KP W+++ G KYA ++ L ELKL+TVC EA+CPN+GECW GG ATAT
Sbjct: 78 KPAWLRQRAAQGEKYARLRESLGELKLNTVCVEAQCPNIGECWDGGGGAGGDGDGIATAT 137
Query: 136 IMILGDTCTRGCRFCNVKTSRTXXXXXXXXXSNVAQAIASWGLEYIVITSVDRDDLPDQG 195
IM+LGDTCTRGCRFC VKTS A A+ASWG++Y+V+TSVDRDDLPD G
Sbjct: 138 IMLLGDTCTRGCRFCAVKTSNKPPPPDALEPLRTAVAVASWGVDYVVLTSVDRDDLPDGG 197
Query: 196 SGHFAETVQKLKVLKPEMLIEALVPDFRGDPACVEKVATSGLHVFAHNIETVEELQRNVR 255
SGHFA+TV+ LK LKP +L+E L DFRGD V +A+SGL VFAHNIETV LQR VR
Sbjct: 198 SGHFAQTVKALKELKPGILVECLTSDFRGDLEAVSSLASSGLDVFAHNIETVRSLQRIVR 257
Query: 256 DHRANFKQSIDVLKLAKEYAPAGTLTKTSIMLGCGETPDQVISTTEKVRAAGVDVMTFGQ 315
D RA + QS+ VLK AK G +TK+SIMLG GET ++V T +RA VD++T GQ
Sbjct: 258 DPRAAYDQSLAVLKHAKN-CKDGMVTKSSIMLGLGETDEEVKQTMCDLRAIDVDILTLGQ 316
Query: 316 YMRPSKRHMPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSYKAGEFYIKAMIEADR 375
Y++P++RH+ V EYVTPE F+ ++ G +GF YVASGP+VRSSY+AGE +++ ++ +
Sbjct: 317 YLQPTERHLRVREYVTPEKFDFWKEYGESLGFLYVASGPLVRSSYRAGELFVQNLVRRKK 376
Query: 376 AK 377
A+
Sbjct: 377 AE 378
>AK108293
Length = 190
Score = 208 bits (529), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 101/179 (56%), Positives = 131/179 (73%), Gaps = 1/179 (0%)
Query: 203 VQKLKVLKPEMLIEALVPDFRGDPACVEKVATSGLHVFAHNIETVEELQRNVRDHRANFK 262
+ K+K P++L+EALVPDF GD AC+E+VATSGL VFAHN+ETVE +VRD RA ++
Sbjct: 1 ISKIKTKSPKILVEALVPDFSGDQACIEQVATSGLDVFAHNVETVERTTPSVRDRRAKYR 60
Query: 263 QSIDVLKLAKEYAPAGTLTKTSIMLGCGETPDQVISTTEKVRAAGVDVMTFGQYMRPSKR 322
QS+ VL+ AK P +TKTSIMLGCGE +V T +R A VDV+TFGQYMRP+KR
Sbjct: 61 QSLAVLRHAKTVKP-DLITKTSIMLGCGEQDAEVEQTLRDLREAEVDVVTFGQYMRPTKR 119
Query: 323 HMPVSEYVTPEAFERYRSLGVDMGFRYVASGPMVRSSYKAGEFYIKAMIEADRAKATTA 381
HM V EYV P+ F ++ +GF YVASGP+VRSSYKAGEF+I+ +++ +A+ TA
Sbjct: 120 HMKVHEYVKPDMFAHWQKRAQGLGFLYVASGPLVRSSYKAGEFFIENVLKQRKAQQATA 178
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,671,730
Number of extensions: 470736
Number of successful extensions: 974
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 969
Number of HSP's successfully gapped: 4
Length of query: 382
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 279
Effective length of database: 11,657,759
Effective search space: 3252514761
Effective search space used: 3252514761
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)