Os01g0769100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipoic acid synthase-like protein.
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Os01g0769100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Lipoic acid synthase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.48 | 0.306 | 11.3 | -1.07 | 0.532 | 0.862 | -0.686 | -2.74 | -0.594 | 0.114 | 25.72 | 75 | -- | -- |
| 44.44 | 0.313 | 11.3 | -0.763 | 0.538 | 0.655 | -0.465 | -- | -0.523 | 23.7 | 25.72 | 75 | -- | -- |
| 44.27 | 0.31 | 11.3 | -0.968 | 0.542 | 0.856 | -- | -2.09 | -0.571 | 0.0392 | 25.8 | 54 | -- | -- |
| 45.36 | 0.316 | 11.3 | -0.748 | 0.544 | 0.683 | -- | -- | -0.52 | 23.8 | 25.8 | 54 | -- | -- |
| 50.55 | 0.331 | 11.3 | -1.14 | -- | 0.773 | -- | -1.26 | -0.698 | -- | 16.5 | 744 | -- | -- |
| 51.15 | 0.335 | 11.2 | -0.672 | 0.409 | -- | -0.545 | -- | -0.49 | 22.3 | -- | -- | -- | -- |
| 52.33 | 0.339 | 11.2 | -0.65 | 0.414 | -- | -- | -- | -0.488 | 22.1 | -- | -- | -- | -- |
| 52.12 | 0.336 | 11.3 | -0.851 | -- | 0.774 | -- | -- | -0.612 | -- | 15.86 | 760 | -- | -- |
| 59.53 | 0.359 | 11.2 | -- | 0.485 | 0.512 | -- | -- | -0.425 | 23.4 | 26 | 18 | -- | -- |
| 62.68 | 0.37 | 11.2 | -0.644 | -- | -- | -- | -- | -0.487 | -- | -- | -- | -- | -- |
| 63.46 | 0.373 | 11.2 | -- | 0.411 | -- | -- | -- | -0.415 | 22 | -- | -- | -- | -- |
| 69.28 | 0.388 | 11.2 | -- | -- | 0.459 | -- | -- | -0.48 | -- | 16.68 | 692 | -- | -- |
| 73.63 | 0.401 | 11.2 | -- | -- | -- | -- | -- | -0.416 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.00 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 7 |
| 5 | 38.34 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 3 |
| 19 | 38.83 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 37 | 39.27 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 4 |
| 52 | 39.56 | temperature | 25 | 270 | < th | dose independent | rect. | 6 | 7 |
| 58 | 39.60 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 72 | 39.71 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 6 |
| 82 | 39.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 2 |
| 86 | 39.77 | temperature | 20 | 720 | > th | dose dependent | sin | 7 | NA |
| 98 | 39.88 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 114 | 39.98 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 271 | 40.83 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 405 | 41.39 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 14 |
| 431 | 41.51 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 443 | 41.53 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 13 |
| 447 | 41.54 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 563 | 41.85 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 9 |
| 586 | 41.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 606 | 41.98 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 620 | 42.00 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 18 |
| 623 | 42.01 | radiation | 1 | 10 | > th | dose dependent | rect. | 5 | 7 |
| 640 | 42.03 | temperature | 25 | 90 | > th | dose dependent | rect. | 7 | 15 |
| 697 | 42.15 | temperature | 20 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 707 | 42.19 | temperature | 25 | 270 | > th | dose independent | sin | 2 | NA |
| 718 | 42.20 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 19 |
| 757 | 42.27 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 762 | 42.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 818 | 42.36 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 935 | 42.52 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 959 | 42.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 8 | 22 |