Os04g0455800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate synthase) (mLIP1).
FiT-DB / Search/ Help/ Sample detail
|
Os04g0455800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Lipoic acid synthetase, mitochondrial precursor (Lip-syn) (Lipoate synthase) (mLIP1).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.46 | 0.28 | 11.6 | -0.105 | 0.658 | 0.39 | -1.11 | 2.32 | -0.0845 | 21.4 | 22.86 | 760 | -- | -- |
| 38.9 | 0.29 | 11.7 | -0.55 | 0.685 | 0.543 | -1.06 | -- | -0.162 | 21.1 | 22.74 | 857 | -- | -- |
| 37.71 | 0.286 | 11.6 | 0.173 | 0.822 | 0.219 | -- | 2.37 | -0.0225 | 21.2 | 21.16 | 1649 | -- | -- |
| 39.22 | 0.292 | 11.7 | -0.55 | 0.648 | 0.565 | -- | -- | -0.192 | 21.2 | 24.4 | 868 | -- | -- |
| 58.97 | 0.358 | 11.6 | -0.257 | -- | 0.901 | -- | 2.06 | -0.121 | -- | 24.15 | 739 | -- | -- |
| 45.3 | 0.316 | 11.7 | -0.433 | 0.818 | -- | -0.603 | -- | -0.134 | 21.2 | -- | -- | -- | -- |
| 46.59 | 0.32 | 11.7 | -0.411 | 0.822 | -- | -- | -- | -0.133 | 21.2 | -- | -- | -- | -- |
| 56.72 | 0.351 | 11.7 | -0.587 | -- | 1 | -- | -- | -0.248 | -- | 24.22 | 749 | -- | -- |
| 46.67 | 0.318 | 11.7 | -- | 0.689 | 0.423 | -- | -- | -0.115 | 21.2 | 24.7 | 859 | -- | -- |
| 85.73 | 0.433 | 11.6 | -0.408 | -- | -- | -- | -- | -0.137 | -- | -- | -- | -- | -- |
| 51.04 | 0.334 | 11.7 | -- | 0.822 | -- | -- | -- | -0.0869 | 21.2 | -- | -- | -- | -- |
| 66.79 | 0.381 | 11.7 | -- | -- | 0.888 | -- | -- | -0.156 | -- | 24.4 | 739 | -- | -- |
| 90.12 | 0.443 | 11.6 | -- | -- | -- | -- | -- | -0.0914 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.35 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 17 |
| 4 | 34.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 13 | 34.82 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 6 |
| 20 | 34.90 | temperature | 20 | 720 | > th | dose dependent | sin | 20 | NA |
| 42 | 35.12 | temperature | 30 | 720 | < th | dose dependent | sin | 20 | NA |
| 86 | 35.43 | temperature | 20 | 90 | > th | dose dependent | sin | 13 | NA |
| 91 | 35.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 11 | 10 |
| 100 | 35.53 | temperature | 20 | 270 | > th | dose dependent | sin | 15 | NA |
| 163 | 35.87 | temperature | 25 | 720 | > th | dose dependent | rect. | 12 | 22 |
| 191 | 35.96 | temperature | 20 | 720 | > th | dose dependent | no | NA | NA |
| 201 | 35.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 205 | 36.00 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 207 | 36.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 18 |
| 227 | 36.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 309 | 36.14 | temperature | 30 | 90 | < th | dose dependent | sin | 15 | NA |
| 353 | 36.22 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 355 | 36.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 20 |
| 359 | 36.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 16 |
| 438 | 36.36 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 18 |
| 454 | 36.39 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 486 | 36.45 | temperature | 20 | 270 | > th | dose dependent | rect. | 15 | 11 |
| 503 | 36.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 3 |
| 534 | 36.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 541 | 36.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 10 |
| 563 | 36.57 | temperature | 25 | 720 | < th | dose independent | rect. | 11 | 11 |
| 602 | 36.60 | temperature | 25 | 720 | < th | dose independent | sin | 20 | NA |
| 603 | 36.60 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 8 |
| 617 | 36.61 | temperature | 20 | 1440 | > th | dose dependent | sin | 5 | NA |
| 626 | 36.62 | temperature | 25 | 720 | > th | dose independent | sin | 20 | NA |
| 627 | 36.62 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |
| 645 | 36.63 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 685 | 36.67 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 2 |
| 700 | 36.68 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 731 | 36.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 771 | 36.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 20 | 23 |
| 793 | 36.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 863 | 36.78 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 938 | 36.83 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 4 |