Os05g0511500 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os05g0511500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Lipoic acid synthase-like protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	5.63	(0.0394)	R²	:	0.521
β₁	:	-2.43	(0.151)	R²_dD	:	0.32	R²_D	:	0.0812
β₂	:	1.68	(0.107)	R²_dC	:	0.323	R²_C	:	0.00846
β₃	:	-3.37	(0.2)	R²_dE	:	0.454	R²_E	:	-0.13
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.586	(0.0906)	R²_dN8	:	0.0704	R²_N8	:	-0.0973
σ	:	0.724
deviance	:	241.81
__

_____

C
peak time of C	:	9.02
E
wheather	:	temperature
threshold	:	30.6
memory length	:	719
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	no
peak or start time of G	:	--
open length of G	:	--

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
237.78	0.725	5.61	-2.22	1.67	-3.34	-0.787	-0.95	-0.56	9.05	30	717	--	--
238.71	0.72	5.62	-2.33	1.66	-3.3	-0.931	--	-0.555	9.13	30.51	736	--	--
239.58	0.721	5.59	-2.12	1.68	-3.32	--	-1.51	-0.518	9.01	30.03	713	--	--
241.81	0.724	5.63	-2.43	1.68	-3.37	--	--	-0.586	9.02	30.6	719	--	--
303.18	0.811	5.7	-2.39	--	-2.97	--	-0.418	-0.626	--	30.97	1479	--	--
387.38	0.923	5.51	-1.48	0.889	--	-1.19	--	0.0443	9.35	--	--	--	--
392.5	0.928	5.51	-1.53	0.895	--	--	--	0.0425	9.29	--	--	--	--
301.75	0.809	5.65	-2.44	--	-2.83	--	--	-0.479	--	37.28	1474	--	--
377.4	0.905	5.53	--	1.45	-2.32	--	--	-0.144	8.6	30.93	570	--	--
439.21	0.979	5.53	-1.53	--	--	--	--	0.0463	--	--	--	--	--
454.1	0.997	5.47	--	0.896	--	--	--	0.213	9.42	--	--	--	--
428.9	0.968	5.56	--	--	-1.87	--	--	-0.0584	--	30.93	570	--	--
501.19	1.04	5.49	--	--	--	--	--	0.216	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	233.47	temperature	30	720	< th	dose dependent	rect.	24	22
2	233.60	temperature	10	720	> th	dose dependent	rect.	17	22
7	234.90	temperature	30	720	< th	dose dependent	rect.	17	21
8	234.96	temperature	30	720	< th	dose dependent	rect.	20	22
45	237.02	temperature	30	720	< th	dose dependent	rect.	13	23
62	237.79	temperature	30	720	< th	dose dependent	no	NA	NA
73	238.69	temperature	30	720	< th	dose dependent	rect.	4	23
82	239.52	temperature	10	720	> th	dose dependent	rect.	12	23
90	240.15	temperature	30	720	< th	dose dependent	rect.	9	23
97	240.65	temperature	10	720	> th	dose dependent	rect.	2	22
108	241.04	temperature	10	720	> th	dose dependent	rect.	21	18
132	241.97	temperature	15	10	> th	dose dependent	rect.	3	23
135	242.13	temperature	15	90	> th	dose dependent	rect.	3	22
138	242.41	temperature	15	720	> th	dose dependent	no	NA	NA
150	242.90	temperature	10	720	> th	dose dependent	rect.	8	23
153	242.97	temperature	15	720	> th	dose dependent	rect.	21	23
159	243.11	temperature	15	720	> th	dose dependent	rect.	23	23
184	244.01	temperature	20	1440	> th	dose dependent	rect.	17	5
227	245.29	temperature	20	1440	> th	dose dependent	sin	16	NA
311	245.89	temperature	20	1440	> th	dose dependent	rect.	15	18
392	246.25	temperature	20	1440	> th	dose dependent	rect.	15	14
414	246.31	temperature	30	1440	< th	dose dependent	rect.	17	5
710	247.16	temperature	30	720	< th	dose dependent	sin	3	NA