BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0449500 Os04g0449500|AK100347
(583 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0449500 Conserved hypothetical protein 1071 0.0
Os04g0483200 Steroid nuclear receptor, ligand-binding domai... 366 e-101
Os02g0597800 Steroid nuclear receptor, ligand-binding domai... 334 1e-91
>Os04g0449500 Conserved hypothetical protein
Length = 583
Score = 1071 bits (2771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 544/583 (93%), Positives = 544/583 (93%)
Query: 1 MDKVKAWAGANYAEPMGSVEQSLRVAYVVLSFCAAFFLGGIKAAVVGPVAAALMVLGNVG 60
MDKVKAWAGANYAEPMGSVEQSLRVAYVVLSFCAAFFLGGIKAAVVGPVAAALMVLGNVG
Sbjct: 1 MDKVKAWAGANYAEPMGSVEQSLRVAYVVLSFCAAFFLGGIKAAVVGPVAAALMVLGNVG 60
Query: 61 VILLLFPAHVWWTIYSLIKTERINAGLKLAVLIALPVXXXXXXXXXXXXSALVALGYGFF 120
VILLLFPAHVWWTIYSLIKTERINAGLKLAVLIALPV SALVALGYGFF
Sbjct: 61 VILLLFPAHVWWTIYSLIKTERINAGLKLAVLIALPVLFGLWLGLGIFGSALVALGYGFF 120
Query: 121 TPWIATFEAFRQESESKKFVHGVVDGTWGTIKGSCTVVRDFADLCFHSYPVYLKELRESS 180
TPWIATFEAFRQESESKKFVHGVVDGTWGTIKGSCTVVRDFADLCFHSYPVYLKELRESS
Sbjct: 121 TPWIATFEAFRQESESKKFVHGVVDGTWGTIKGSCTVVRDFADLCFHSYPVYLKELRESS 180
Query: 181 QNCEPHSIRVLDVPSCIAVGLLGLIVDIPLYTVIALIKSPYMLFKGWQRLLHDLISREGP 240
QNCEPHSIRVLDVPSCIAVGLLGLIVDIPLYTVIALIKSPYMLFKGWQRLLHDLISREGP
Sbjct: 181 QNCEPHSIRVLDVPSCIAVGLLGLIVDIPLYTVIALIKSPYMLFKGWQRLLHDLISREGP 240
Query: 241 FLETVCVPIAGLAILFWPLVVVGSVLLAIVSSIFVGLYGAVVVYQEKSFQRGVSYVVAMV 300
FLETVCVPIAGLAILFWPLVVVGSVLLAIVSSIFVGLYGAVVVYQEKSFQRGVSYVVAMV
Sbjct: 241 FLETVCVPIAGLAILFWPLVVVGSVLLAIVSSIFVGLYGAVVVYQEKSFQRGVSYVVAMV 300
Query: 301 AEFDEYTNDWLYLREGTVLXXXXXXXXXXXXXTEFSVRTNASVKGGDQPSSNEAPAMLVP 360
AEFDEYTNDWLYLREGTVL TEFSVRTNASVKGGDQPSSNEAPAMLVP
Sbjct: 301 AEFDEYTNDWLYLREGTVLPKPSYRKRKSSSSTEFSVRTNASVKGGDQPSSNEAPAMLVP 360
Query: 361 TLAPARSVREAIQEVKMVQIWENMMKNCELRGRDLLNLNVITTVDLTEWLRTKESGHEAI 420
TLAPARSVREAIQEVKMVQIWENMMKNCELRGRDLLNLNVITTVDLTEWLRTKESGHEAI
Sbjct: 361 TLAPARSVREAIQEVKMVQIWENMMKNCELRGRDLLNLNVITTVDLTEWLRTKESGHEAI 420
Query: 421 GLGVPSYSLLCMILHSIKAXXXXXXXXXXXXXXQYNRPQDRLIDWFLHPVLVLKDQIQAL 480
GLGVPSYSLLCMILHSIKA QYNRPQDRLIDWFLHPVLVLKDQIQAL
Sbjct: 421 GLGVPSYSLLCMILHSIKAGSGGLLIGNGIEINQYNRPQDRLIDWFLHPVLVLKDQIQAL 480
Query: 481 KMTEEEVRFLEKLTLFIGNSERANGWDNGAEIPQDPVRAGQIQAISRRLVGIVRSMSKFP 540
KMTEEEVRFLEKLTLFIGNSERANGWDNGAEIPQDPVRAGQIQAISRRLVGIVRSMSKFP
Sbjct: 481 KMTEEEVRFLEKLTLFIGNSERANGWDNGAEIPQDPVRAGQIQAISRRLVGIVRSMSKFP 540
Query: 541 TYRRRHRHVMKLLVTYSVEKEGSFRSSASNRSVPIFEITQLEV 583
TYRRRHRHVMKLLVTYSVEKEGSFRSSASNRSVPIFEITQLEV
Sbjct: 541 TYRRRHRHVMKLLVTYSVEKEGSFRSSASNRSVPIFEITQLEV 583
>Os04g0483200 Steroid nuclear receptor, ligand-binding domain containing protein
Length = 588
Score = 366 bits (939), Expect = e-101, Method: Compositional matrix adjust.
Identities = 215/548 (39%), Positives = 315/548 (57%), Gaps = 25/548 (4%)
Query: 32 FCAAFFLGGIKAAVVGPVAAALMVLGNVGVILLLFPAHVWWTIYSLIKTERINAGLKLAV 91
FC LG IK ++ P A +M +G +IL L+P HV WT Y +I+T+ + +KL +
Sbjct: 21 FCGLLILGVIKGILICPWACLIMAIGLSALILGLWPMHVIWTYYCIIRTKLVGPVVKLLL 80
Query: 92 LIALPVXXXXXXXXXXXXSALVALGYGFFTPWIATFEAFRQESESKKFVHGVVDGTWGTI 151
LIA S L L YGF P +ATF A + E K FVH VDGTW TI
Sbjct: 81 LIAATATLILWLIVGIPGSILAGLVYGFLAPIMATFGAVGKGKE-KPFVHCFVDGTWSTI 139
Query: 152 KGSCTVVRDFADLCFHSYPVYLKELR-ESSQNCEPHSIRVLDVPSCIAVGLLGLIVDIPL 210
GSCT+VRD DL FHSY + +LR ++ + +P+ IR+LD+P + GLI+D +
Sbjct: 140 TGSCTIVRDVKDLLFHSYFSIMDDLRLQAPPDNKPYEIRLLDIPGALLSAACGLILDGIM 199
Query: 211 YTVIALIKSPYMLFKGWQRLLHDLISREGPFLETVCVPIAGLAILFWPLVVVGSVLLAIV 270
+T+IA+ K P MLFKGW+RL+ D+I REGPFLET CVP AGLAIL WP VVG+VL +I+
Sbjct: 200 FTLIAIYKCPVMLFKGWKRLIQDMIGREGPFLETACVPFAGLAILLWPFAVVGAVLASIL 259
Query: 271 SSIFVGLYGAVVVYQEKSFQRGVSYVVAMVAEFDEYTNDWLYLREGTVLXXXXXXXXXXX 330
SSI +G +GAVV YQE S + G+SYVV+ V+ FDEYTND L + G+
Sbjct: 260 SSIPLGAFGAVVAYQESSLKMGLSYVVSSVSIFDEYTNDVLDMAPGSCFPRL-------- 311
Query: 331 XXTEFSVRTNASVKGG-DQPSS--NEAPAMLVPTLAPAR--SVREAIQEVKMVQIWENMM 385
++ R ++S G +P+S E P PAR S + +I++ ++ E++
Sbjct: 312 ---KYRKREDSSHGGSLSRPTSFNKEKQEGKKP---PARVTSFKNSIEDFNPFKLLEHLF 365
Query: 386 KNCELRGRDLLNLNVITTVDLTEWLRTKESGHEAIGLGVPSYSLLCMILHSIKAXXXXXX 445
C+ +G L+N VIT D+ E ++ + G + +G+P+Y +L +L S KA
Sbjct: 366 VECKHQGETLVNEGVITMKDIEE-TKSGKVGTGVLNVGLPAYVILNALLRSAKANSVGLL 424
Query: 446 XXXXXXXXQYNRPQDRLIDWFLHPVLVLKDQIQALKMTEEEVRFLEKLTLFIGNSERANG 505
NRP+ L +WF P+LV+K+QI+A TEEE ++L+ L IG +R G
Sbjct: 425 LSDGSEITSDNRPKHTLYEWFFDPLLVIKEQIKAENFTEEEEKYLKMRVLLIGGPDRVKG 484
Query: 506 WDNGAEIPQ-DPVRAGQIQAISRRLVGIVRSMSKFPTYRRRHRHVMKLLVTYSVEKEGSF 564
+ ++P D + +I A +RRL GI +S+S++PT +RR ++K L++ G
Sbjct: 485 --SLPDVPSLDERKKAEIDAFARRLQGITKSISRYPTAKRRFDILVKQLLSELERTVGGG 542
Query: 565 RSSASNRS 572
+S+ ++S
Sbjct: 543 QSTNGSQS 550
>Os02g0597800 Steroid nuclear receptor, ligand-binding domain containing protein
Length = 585
Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 195/519 (37%), Positives = 287/519 (55%), Gaps = 29/519 (5%)
Query: 44 AVVGPVAAALMVLGNVGVILLLFPAHVWWTIYSLIKTERINAGLKLAVLIALPVXXXXXX 103
A++ P A +M++G ++L L+P HV WT Y +I+++ + +KL +L+A V
Sbjct: 33 ALLFPWAWLIMMIGISALVLGLWPMHVIWTYYCIIRSKLVGPVVKLLLLVAASVILVLWL 92
Query: 104 XXXXXXSALVALGYGFFTPWIATFEAFRQESESKKFVHGVVDGTWGTIKGSCTVVRDFAD 163
S L+ + YGF P +ATF+A E + + H VDGTW TI GSCTVVRD D
Sbjct: 93 IVGIVGSVLIGVVYGFLAPVMATFDAV-GEGKERPLYHCFVDGTWSTITGSCTVVRDLKD 151
Query: 164 LCFHSYPVYLKELR-ESSQNCEPHSIRVLDVPSCIAVGLLGLIVDIPLYTVIALIKSPYM 222
L HSY + +LR + EP+ IRVLD+P + G +VD ++T+IA K P M
Sbjct: 152 LLLHSYFSIMDDLRFHAPPGGEPYEIRVLDIPGALFAAACGFLVDGIMFTLIAFYKFPVM 211
Query: 223 LFKGWQRLLHDLISREGPFLETVCVPIAGLAILFWPLVVVGSVLLAIVSSIFVGLYGAVV 282
LFKGW+RL+ DL+ REGPFLET CVP AGLAIL WP V G+ L +I+SSI +G + AVV
Sbjct: 212 LFKGWKRLIEDLVGREGPFLETACVPFAGLAILLWPFAVFGAFLASIISSIPLGAFAAVV 271
Query: 283 VYQEKSFQRGVSYVVAMVAEFDEYTNDWLYLREGTVLXXXXXXXXXXXXXTEFSVRTN-A 341
VYQE S G++YV++ VA FDEYTND L + G+ F R N A
Sbjct: 272 VYQESSLIMGLNYVISSVAIFDEYTNDVLDMAPGSCF-------------PRFKYRKNEA 318
Query: 342 SVKGGDQPSSNEAPAMLVPTLAPAR--SVREAIQEVKMVQIWENMMKNCELRGRDLLNLN 399
S +GG AP+R S + + E ++ +++ + C+ RG L+
Sbjct: 319 STEGGSLSRPASFKDKQDGKKAPSRVTSFKGSFDEFNPFKLLDHLFEECKHRGEVLVAEG 378
Query: 400 VITTVDLTEWLRTKESGHEAIGLGVPSYSLLCMILHSIKAXXXXXXXXXXXXXXQYNRPQ 459
VIT D+ E ++ + G + +G+P+Y +L ++ S KA NRP+
Sbjct: 379 VITPKDIEE-TKSGKIGIGVLNVGLPAYVILHALIRSAKANSDGLILSDGSEITSDNRPK 437
Query: 460 DRLIDWFLHPVLVLKDQIQALKMTEEEVRFLEKLTLFIGNSERANGWDNGAEIPQDPV-- 517
+ + DWF P++V+K+QI+A TEEE +L+K L + +R +P P
Sbjct: 438 NTIFDWFFDPLMVIKEQIKAQNFTEEEEAYLKKRVLLTSDPKRLK-----EVVPHLPSSL 492
Query: 518 ---RAGQIQAISRRLVGIVRSMSKFPTYRRRHRHVMKLL 553
+ +I A+SRRL GI RS+S++PT +RR +++ L
Sbjct: 493 NERKQAEIDALSRRLQGITRSISRYPTAKRRFDDLVRSL 531
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,909,144
Number of extensions: 625914
Number of successful extensions: 1313
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 3
Length of query: 583
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 477
Effective length of database: 11,501,117
Effective search space: 5486032809
Effective search space used: 5486032809
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 159 (65.9 bits)