Os04g0483200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Steroid nuclear receptor, ligand-binding domain containing protein.
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Os04g0483200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Steroid nuclear receptor, ligand-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 67.25 | 0.385 | 7.22 | 0.834 | 1.18 | 1.36 | 0.574 | -1.05 | -0.121 | 15.6 | 23.15 | 117 | -- | -- |
| 67.7 | 0.383 | 7.2 | 0.997 | 1.19 | 1.27 | 0.364 | -- | -0.0744 | 15.5 | 23 | 123 | -- | -- |
| 68.01 | 0.384 | 7.2 | 0.932 | 1.18 | 1.33 | -- | -0.414 | -0.0966 | 15.5 | 23.1 | 121 | -- | -- |
| 68.09 | 0.384 | 7.2 | 0.998 | 1.18 | 1.3 | -- | -- | -0.075 | 15.5 | 23.02 | 125 | -- | -- |
| 114.43 | 0.498 | 7.25 | 0.525 | -- | 2.49 | -- | -2.17 | -0.267 | -- | 23.93 | 116 | -- | -- |
| 94.22 | 0.455 | 7.16 | 1.24 | 1.72 | -- | 0.794 | -- | 0.108 | 15.6 | -- | -- | -- | -- |
| 96.13 | 0.459 | 7.16 | 1.26 | 1.72 | -- | -- | -- | 0.112 | 15.6 | -- | -- | -- | -- |
| 117 | 0.504 | 7.22 | 0.799 | -- | 2.33 | -- | -- | -0.201 | -- | 23.82 | 116 | -- | -- |
| 92.69 | 0.448 | 7.23 | -- | 1.05 | 1.59 | -- | -- | -0.222 | 15.5 | 22.7 | 121 | -- | -- |
| 260.95 | 0.755 | 7.16 | 1.18 | -- | -- | -- | -- | 0.0663 | -- | -- | -- | -- | -- |
| 137.75 | 0.549 | 7.19 | -- | 1.7 | -- | -- | -- | -0.0279 | 15.6 | -- | -- | -- | -- |
| 132.76 | 0.537 | 7.25 | -- | -- | 2.47 | -- | -- | -0.332 | -- | 23.3 | 115 | -- | -- |
| 297.97 | 0.806 | 7.19 | -- | -- | -- | -- | -- | -0.0651 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 66.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 2 | 67.04 | temperature | 20 | 90 | > th | dose dependent | rect. | 21 | 22 |
| 4 | 67.26 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 20 |
| 32 | 68.47 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 141 | 69.94 | temperature | 25 | 90 | > th | dose dependent | no | NA | NA |
| 153 | 70.01 | temperature | 25 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 303 | 70.73 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 310 | 70.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 321 | 70.81 | temperature | 30 | 30 | < th | dose dependent | rect. | 5 | 18 |
| 380 | 71.18 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 20 |
| 434 | 71.45 | temperature | 25 | 10 | > th | dose dependent | sin | 21 | NA |
| 484 | 71.70 | temperature | 25 | 90 | > th | dose dependent | rect. | 14 | 23 |
| 617 | 72.20 | temperature | 25 | 270 | > th | dose independent | rect. | 20 | 22 |
| 629 | 72.25 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 732 | 72.76 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 797 | 72.98 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 808 | 73.02 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 908 | 73.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 958 | 73.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 976 | 73.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 14 |