Os04g0449500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0449500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 186.97 | 0.642 | 8.22 | 2.85 | 0.442 | -1.2 | -0.809 | 1.39 | 1.13 | 23.2 | 10 | 1441 | -- | -- |
| 188.68 | 0.64 | 8.23 | 2.65 | 0.647 | -1.25 | -0.64 | -- | 1.09 | 23 | 10.01 | 1360 | -- | -- |
| 189.45 | 0.641 | 8.22 | 2.88 | 0.45 | -1.21 | -- | 1.35 | 1.13 | 22.5 | 10.01 | 1441 | -- | -- |
| 190.54 | 0.643 | 8.24 | 2.66 | 0.627 | -1.28 | -- | -- | 1.1 | 22.8 | 10.01 | 1360 | -- | -- |
| 201.98 | 0.662 | 8.22 | 2.89 | -- | -1.18 | -- | 1.44 | 1.13 | -- | 10.01 | 1445 | -- | -- |
| 228.91 | 0.709 | 8.33 | 2.25 | 0.409 | -- | -0.994 | -- | 0.696 | 23.3 | -- | -- | -- | -- |
| 232.43 | 0.714 | 8.33 | 2.29 | 0.434 | -- | -- | -- | 0.703 | 22.3 | -- | -- | -- | -- |
| 203.38 | 0.664 | 8.23 | 2.8 | -- | -1.34 | -- | -- | 1.08 | -- | 10.01 | 1507 | -- | -- |
| 356.9 | 0.88 | 8.26 | -- | 0.425 | -1.18 | -- | -- | 1.01 | 22.4 | 9.87 | 2895 | -- | -- |
| 243.89 | 0.73 | 8.32 | 2.3 | -- | -- | -- | -- | 0.704 | -- | -- | -- | -- | -- |
| 371.06 | 0.901 | 8.39 | -- | 0.448 | -- | -- | -- | 0.447 | 22.7 | -- | -- | -- | -- |
| 339.01 | 0.858 | 8.31 | -- | -- | -1.45 | -- | -- | 0.676 | -- | 7.75 | 1585 | -- | -- |
| 383.45 | 0.914 | 8.38 | -- | -- | -- | -- | -- | 0.449 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 180.46 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 3 | 181.00 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 4 | 181.46 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 6 | 181.98 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 7 | 181.98 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 10 | 182.22 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 20 |
| 13 | 182.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 14 | 182.36 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 16 | 182.38 | radiation | 10 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 21 | 182.64 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 6 |
| 22 | 182.81 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 81 | 183.83 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 83 | 183.84 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 10 |
| 97 | 183.88 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 133 | 184.27 | humidity | 50 | 1440 | > th | dose dependent | rect. | 12 | 2 |
| 135 | 184.28 | radiation | 10 | 1440 | > th | dose independent | sin | 20 | NA |
| 136 | 184.30 | humidity | 50 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 137 | 184.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 155 | 184.72 | humidity | 90 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 163 | 184.77 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 180 | 185.20 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 7 |
| 183 | 185.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 184 | 185.24 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 250 | 185.80 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 9 |
| 257 | 185.86 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 291 | 186.02 | radiation | 10 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 352 | 186.54 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 3 |
| 380 | 186.88 | humidity | 50 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 412 | 186.97 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 497 | 187.05 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 6 |
| 555 | 187.42 | humidity | 90 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 561 | 187.45 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 569 | 187.50 | humidity | 80 | 1440 | < th | dose independent | sin | 3 | NA |
| 592 | 187.69 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 681 | 188.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 768 | 188.57 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 783 | 188.66 | humidity | 50 | 720 | > th | dose dependent | rect. | 11 | 13 |
| 785 | 188.69 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 832 | 189.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 890 | 189.38 | humidity | 60 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 903 | 189.45 | humidity | 80 | 1440 | < th | dose dependent | rect. | 7 | 10 |
| 906 | 189.45 | humidity | 80 | 1440 | < th | dose dependent | rect. | 11 | 21 |
| 943 | 189.66 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 958 | 189.74 | humidity | 80 | 1440 | < th | dose dependent | sin | 22 | NA |
| 960 | 189.75 | humidity | 80 | 1440 | > th | dose independent | sin | 2 | NA |