BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0439100 Os04g0439100|AK120173
(976 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0439100 T-complex 11 family protein 1775 0.0
Os04g0439200 T-complex 11 family protein 1224 0.0
Os02g0556700 T-complex 11 family protein 952 0.0
>Os04g0439100 T-complex 11 family protein
Length = 976
Score = 1775 bits (4598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/976 (90%), Positives = 879/976 (90%)
Query: 1 QAEANRMRLLHAHMQKRAAMKERTARSLVRKQTSERKYTERVKSLILQXXXXXXXXXXXX 60
QAEANRMRLLHAHMQKRAAMKERTARSLVRKQTSERKYTERVKSLILQ
Sbjct: 1 QAEANRMRLLHAHMQKRAAMKERTARSLVRKQTSERKYTERVKSLILQKRNAAEKKRLAL 60
Query: 61 XXXXXXXXQARILHIQRAAKTVCXXXXXXXXXXXXXXXXXXXXAKRQRAEYLKQRVSPRS 120
QARILHIQRAAKTVC AKRQRAEYLKQRVSPRS
Sbjct: 61 LEAEKRKAQARILHIQRAAKTVCSKRESERRQLQEQLESKLQKAKRQRAEYLKQRVSPRS 120
Query: 121 SAHADYIKHAEFLSTKLARCWKRFLKSNKTTYALVQAYDALGINEMSVKSMPFENLAMLM 180
SAHADYIKHAEFLSTKLARCWKRFLKSNKTTYALVQAYDALGINEMSVKSMPFENLAMLM
Sbjct: 121 SAHADYIKHAEFLSTKLARCWKRFLKSNKTTYALVQAYDALGINEMSVKSMPFENLAMLM 180
Query: 181 ESPTTLQTTKAVLDRFEKRLLLSQPTGSSSAENIDHLLKRLGSPKRKAPASRSRVAAKKP 240
ESPTTLQTTKAVLDRFEKRLLLSQPTGSSSAENIDHLLKRLGSPKRKAPASRSRVAAKKP
Sbjct: 181 ESPTTLQTTKAVLDRFEKRLLLSQPTGSSSAENIDHLLKRLGSPKRKAPASRSRVAAKKP 240
Query: 241 AKGSETSKLSRYSLRVVLCSYMILAHPGAVLSGQGEKENLLMESAENFVKEFELLVKTVL 300
AKGSETSKLSRYSLRVVLCSYMILAHPGAVLSGQGEKENLLMESAENFVKEFELLVKTVL
Sbjct: 241 AKGSETSKLSRYSLRVVLCSYMILAHPGAVLSGQGEKENLLMESAENFVKEFELLVKTVL 300
Query: 301 DRPGGASMQSTDAASQKKFRTQLAAFDKAWCAYLYHFVVWKLKDAKSLEQDLVRAACKLE 360
DRPGGASMQSTDAASQKKFRTQLAAFDKAWCAYLYHFVVWKLKDAKSLEQDLVRAACKLE
Sbjct: 301 DRPGGASMQSTDAASQKKFRTQLAAFDKAWCAYLYHFVVWKLKDAKSLEQDLVRAACKLE 360
Query: 361 LSMMQTCKLSSDGQSHDLSHDMKAIQKQVTDDQKLLREKIQHLSGDAGIERMNSALSDTR 420
LSMMQTCKLSSDGQSHDLSHDMKAIQKQVTDDQKLLREKIQHLSGDAGIERMNSALSDTR
Sbjct: 361 LSMMQTCKLSSDGQSHDLSHDMKAIQKQVTDDQKLLREKIQHLSGDAGIERMNSALSDTR 420
Query: 421 SKFFEAKENGNPLATSVANVSTPLSINSSGQVPNPTSKPTVEGSSFTAQSLPGAAXXXXX 480
SKFFEAKENGNPLATSVANVSTPLSINSSGQVPNPTSKPTVEGSSFTAQSLPGAA
Sbjct: 421 SKFFEAKENGNPLATSVANVSTPLSINSSGQVPNPTSKPTVEGSSFTAQSLPGAASSSSS 480
Query: 481 XXPMKPPTDNEQMVNEMLHEDDVSFARNSDNVSSAEKDFQAKVKATMEKAFWDLVTDSMR 540
PMKPPTDNEQMVNEMLHEDDVSFARNSDNVSSAEKDFQAKVKATMEKAFWDLVTDSMR
Sbjct: 481 TSPMKPPTDNEQMVNEMLHEDDVSFARNSDNVSSAEKDFQAKVKATMEKAFWDLVTDSMR 540
Query: 541 GDKPDYSQLINLVKEVRNSLHELASNXXXXXXXXXXXXXXXSQVLQSGSQDTRYLGQILQ 600
GDKPDYSQLINLVKEVRNSLHELASN SQVLQSGSQDTRYLGQILQ
Sbjct: 541 GDKPDYSQLINLVKEVRNSLHELASNELKEEILENIDLEILSQVLQSGSQDTRYLGQILQ 600
Query: 601 YSLDMVRKLSAPAKEDDMKRSHEKLLNELAASSEVNDNGISSFVIAVIKGLRFTLEEIKQ 660
YSLDMVRKLSAPAKEDDMKRSHEKLLNELAASSEVNDNGISSFVIAVIKGLRFTLEEIKQ
Sbjct: 601 YSLDMVRKLSAPAKEDDMKRSHEKLLNELAASSEVNDNGISSFVIAVIKGLRFTLEEIKQ 660
Query: 661 LQTEVSKARIQLMQPIIKGSAGVEYLQKAFTDRYGPPANASVSLPITKQWVSATKSIVEQ 720
LQTEVSKARIQLMQPIIKGSAGVEYLQKAFTDRYGPPANASVSLPITKQWVSATKSIVEQ
Sbjct: 661 LQTEVSKARIQLMQPIIKGSAGVEYLQKAFTDRYGPPANASVSLPITKQWVSATKSIVEQ 720
Query: 721 EWSSHLESLQALPADHAQHVVPVLRXXXXXXXXXXXXXXXXXXXXXECKGEKIDKLTRVG 780
EWSSHLESLQALPADHAQHVVPVLR ECKGEKIDKLTRVG
Sbjct: 721 EWSSHLESLQALPADHAQHVVPVLRAGHGAPAPQASSSAASSSGLPECKGEKIDKLTRVG 780
Query: 781 LLQLISNVEGLNMQSTPETFQINLLRLRAVQDQFQKVIVIATSMLVLHQVLMLKIAPPEL 840
LLQLISNVEGLNMQSTPETFQINLLRLRAVQDQFQKVIVIATSMLVLHQVLMLKIAPPEL
Sbjct: 781 LLQLISNVEGLNMQSTPETFQINLLRLRAVQDQFQKVIVIATSMLVLHQVLMLKIAPPEL 840
Query: 841 QNTISELYDALVKLLDNNADASTKEIVEAMTRSLASVGSLPEEQIQDTTELATKMLLKSL 900
QNTISELYDALVKLLDNNADASTKEIVEAMTRSLASVGSLPEEQIQDTTELATKMLLKSL
Sbjct: 841 QNTISELYDALVKLLDNNADASTKEIVEAMTRSLASVGSLPEEQIQDTTELATKMLLKSL 900
Query: 901 QAGDIVFGKVSRAVYFAFRXXXXXXXXXXXXXXEAPLRRLGAAKLADRVVKAGEVLIKMA 960
QAGDIVFGKVSRAVYFAFR EAPLRRLGAAKLADRVVKAGEVLIKMA
Sbjct: 901 QAGDIVFGKVSRAVYFAFRGVVLGGGAKGKKLAEAPLRRLGAAKLADRVVKAGEVLIKMA 960
Query: 961 VISEKVHGQWYKALAL 976
VISEKVHGQWYKALAL
Sbjct: 961 VISEKVHGQWYKALAL 976
>Os04g0439200 T-complex 11 family protein
Length = 804
Score = 1224 bits (3167), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 643/828 (77%), Positives = 675/828 (81%), Gaps = 40/828 (4%)
Query: 155 VQAYDALGINEMSVKSMPFENLAMLMESPTTLQTTKAVLDRFEKRLLLSQPTGSSSAENI 214
V+AYDALGINE SVKSMPFENLA LM+SP TLQ TKAVLDRFEK L P SS NI
Sbjct: 11 VRAYDALGINETSVKSMPFENLATLMQSPATLQATKAVLDRFEKLL----PLLSSPVINI 66
Query: 215 DHLLKRLGSPKRKAPASRSRVAAKKPAKGSETSKLSRYSLRVVLCSYMILAHPGAVLSGQ 274
DHLLK LGSPK+K + A+ SRYSLRVVLCSYMILAHPGAVLSGQ
Sbjct: 67 DHLLKHLGSPKKKKTPPPAAAASA-----------SRYSLRVVLCSYMILAHPGAVLSGQ 115
Query: 275 GEKENLLMESAENFVKEFELLVKTVLDRPGGASMQSTDAAS-QKKFRTQLAAFDKAWCAY 333
GEKE LLM+SA +FVKEFELLVKTVL++ QSTDAA+ QK F QLA FD+AWCAY
Sbjct: 116 GEKEKLLMDSAGSFVKEFELLVKTVLEK------QSTDAAAGQKMFSAQLADFDRAWCAY 169
Query: 334 LYHFVVWKLKDAKSLEQDLVRAACKLELSMMQTCKLSSDGQSHD-LSHDMKAIQKQVTDD 392
LY FVVWKLKDAKSLE DLVRAACKLELSMMQTCKLSSDGQSH+ LSHDMKAIQKQV DD
Sbjct: 170 LYCFVVWKLKDAKSLEDDLVRAACKLELSMMQTCKLSSDGQSHNGLSHDMKAIQKQVADD 229
Query: 393 QKLLREKIQHLSGDAGIERMNSALSDTRSKFFEAKENGNPLATSVANVSTPLSINSSGQV 452
QKLLREK+ LSGDAGIERMNSALSDTRSKFFEAKENGNPLA SVANVSTPLSI SSG
Sbjct: 230 QKLLREKVHQLSGDAGIERMNSALSDTRSKFFEAKENGNPLAASVANVSTPLSIGSSG-- 287
Query: 453 PNPTSKPTVEGSSFTAQSLPGAAXXXXXXXPMKPPTDNEQMVNEMLHEDDVSFARNSDNV 512
SSFTAQSLPGAA MK PTDNEQM+NEMLHEDDVSF NSDNV
Sbjct: 288 -----------SSFTAQSLPGAASSPSSSSLMKQPTDNEQMLNEMLHEDDVSFGGNSDNV 336
Query: 513 SSAEKDFQAKVKATMEKAFWDLVTDSMRGDKPDYSQLINLVKEVRNSLHELASNXXXXXX 572
SSAEK+FQAKVK+TMEKAFWDLVTDSM+GDKPDY+QLINLVKEVR+SLHELAS
Sbjct: 337 SSAEKEFQAKVKSTMEKAFWDLVTDSMKGDKPDYTQLINLVKEVRDSLHELASKELKEEI 396
Query: 573 XXXXXXXXXSQVLQSGSQDTRYLGQILQYSLDMVRKLSAPAKEDDMKRSHEKLLNELAAS 632
SQVL+SGSQDTRYLGQI+ YSLDM+RKLSAPAKEDDMKRSHEKLLNELAAS
Sbjct: 397 LENIDLEILSQVLESGSQDTRYLGQIMHYSLDMIRKLSAPAKEDDMKRSHEKLLNELAAS 456
Query: 633 SEVNDNGISSFVIAVIKGLRFTLEEIKQLQTEVSKARIQLMQPIIKGSAGVEYLQKAFTD 692
SEVNDNGISSFVIAVIKGLRFTLEEIKQLQ+EVSKARIQLMQPIIKGSAGVEYLQKAF D
Sbjct: 457 SEVNDNGISSFVIAVIKGLRFTLEEIKQLQSEVSKARIQLMQPIIKGSAGVEYLQKAFAD 516
Query: 693 RYGPPANASVSLPITKQWVSATKSIVEQEWSSHLESLQALPADHAQH-VVPVLRXXXXXX 751
RYGPPANAS SLPITKQWVSATKSIVEQEWSSHLESLQALPADHAQ VVP LR
Sbjct: 517 RYGPPANASASLPITKQWVSATKSIVEQEWSSHLESLQALPADHAQRVVVPALRAGHGAP 576
Query: 752 XXXXXXXXXXXXXXXECKGEKIDKLTRVGLLQLISNVEGLNMQSTPETFQINLLRLRAVQ 811
ECKGEKIDKLTRVGLLQLISNVEGLNMQSTPETFQINL RLRAVQ
Sbjct: 577 MAQASSSAASGSGLPECKGEKIDKLTRVGLLQLISNVEGLNMQSTPETFQINLPRLRAVQ 636
Query: 812 DQFQKVIVIATSMLVLHQVLMLKIAPPELQNTISELYDALVKLLDNNADASTKEIVEAMT 871
DQFQKVIVIATS+LVLHQVL+ K+A PELQN ISELYDALVKLLD+N DAST+EIVEAM
Sbjct: 637 DQFQKVIVIATSILVLHQVLVSKVAAPELQNAISELYDALVKLLDSNPDASTEEIVEAMA 696
Query: 872 RSLASVG--SLPEEQIQDTTELATKMLLKSLQAGDIVFGKVSRAVYFAFR-XXXXXXXXX 928
SLA+VG SLPE+Q Q T ELATKMLLKSLQAGD+VFGKVSR VY AFR
Sbjct: 697 SSLATVGSLSLPEKQAQATAELATKMLLKSLQAGDVVFGKVSRTVYCAFRGVVLGGGGVK 756
Query: 929 XXXXXEAPLRRLGAAKLADRVVKAGEVLIKMAVISEKVHGQWYKALAL 976
EAPLRRL AAKLADRVVKAGE+LI MAVISEKVHGQWYKALAL
Sbjct: 757 GKKLAEAPLRRLAAAKLADRVVKAGEMLINMAVISEKVHGQWYKALAL 804
>Os02g0556700 T-complex 11 family protein
Length = 1166
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 525/1031 (50%), Positives = 659/1031 (63%), Gaps = 80/1031 (7%)
Query: 1 QAEANRMRLLHAHMQKRAAMKERTARSLVRKQTSERKYTERVKSLILQXXXXXXXXXXXX 60
QAE R +L+HA Q+RAA++ERT + LV++ E KY ERV S ILQ
Sbjct: 158 QAEEKRTQLMHARSQRRAALEERTTKYLVQRVAWENKYRERVHSAILQKRTAAEKRRTGL 217
Query: 61 XXXXXXXXQARILHIQRAAKTVCXXXXXXXXXXXXXXXXXXXXAKRQRAEYLKQRVSPRS 120
Q R +Q AA+T+ AKRQRAEYLKQR S S
Sbjct: 218 LEGEKRRAQGRFSQVQLAARTLSCQREADRSKLKEQLEDKLQRAKRQRAEYLKQRGSTHS 277
Query: 121 SAHADYIKHAEFLSTKLARCWKRFLKSNKTTYALVQAYDALGINEMSVKSMPFENLAMLM 180
+ +KH +FLS LARCW+RF+ S KTT L +A+D L INE SVK MPFE LA+ +
Sbjct: 278 FTYTASVKHGDFLSRNLARCWRRFITSRKTTVVLARAFDMLRINEESVKPMPFEKLALCI 337
Query: 181 ESPTTLQTTKAVLDRFEKRLLLSQPTGSSSAENIDHLLKRLGSPKRKAPAS--RSRVAAK 238
ESPT LQTT+A LDR E R LSQ + SS ENIDHLLK LGSPKR S R+RV
Sbjct: 338 ESPTVLQTTRAFLDRLESRFTLSQSSSPSSPENIDHLLKHLGSPKRTLSKSGGRTRVTPT 397
Query: 239 KPAKGSETSKLSRYSLRVVLCSYMILAHPGAVLSGQGEKENLLMESAENFVKEFELLVKT 298
K A+ S+ SKL RYS R+VLC+YMIL HP V + +GE+E LL+ESAENFVKEFELL+KT
Sbjct: 398 KAARNSDVSKLPRYSPRIVLCAYMILGHPSVVFNERGEREKLLVESAENFVKEFELLIKT 457
Query: 299 VLD----------------RPGGASMQSTDA--ASQKKFRTQLAAFDKAWCAYLYHFVVW 340
+LD PG ++ Q + A A +KKFR+QLA+FDKAWCAYLYHFVVW
Sbjct: 458 ILDGSSGACILKQPILDDLSPGSSNYQESSAVVADRKKFRSQLASFDKAWCAYLYHFVVW 517
Query: 341 KLKDAKSLEQDLVRAACKLELSMMQTCKLSSDGQSHDLSHDMKAIQKQVTDDQKLLREKI 400
K KDAKSLE+DLVRAACKLELSMMQTCK +++GQ +L+ ++KAIQK+V DQ LLREK+
Sbjct: 518 KAKDAKSLEEDLVRAACKLELSMMQTCKFTAEGQPENLNDNLKAIQKEVMVDQTLLREKV 577
Query: 401 QHLSGDAGIERMNSALSDTRSKFFEAKENGNPLATSVANVSTPLSINSSGQVP------- 453
+HL G+AGIERM ALS+ R+KFFEAK N +PLAT++ NV+ + SSG+ P
Sbjct: 578 RHLGGEAGIERMEVALSEARTKFFEAKGNRSPLATTIKNVA---ATCSSGESPISDMKEN 634
Query: 454 ---NPTSKPTVEGSSFTAQSLPGAAXXX--XXXXPM--------KPPTDNEQMVNEMLHE 500
N S F S P + PM K PT+NEQMVNE+LH
Sbjct: 635 SNINDKRPSQAVQSMFRVPSSPSESNTAGITMSNPMTVSSTLSEKRPTENEQMVNEILHG 694
Query: 501 DDVSFARNSDNVSSAEKDFQAKVKATMEKAFWDLVTDSMRGDKPDYSQLINLVKEVRNSL 560
A +S N+ + E F+ KV+ TMEKAFWD+V DS+RGD PDYS L+ LVKEVR++L
Sbjct: 695 ---FLADSSSNIGTVEGGFKEKVRETMEKAFWDVVVDSLRGDMPDYSYLVQLVKEVRDTL 751
Query: 561 HELASNXXXXXXXXXXXXXXXSQVLQSGSQDTRYLGQILQYSLDMVRKLSAPAKEDDMKR 620
+E+ QVL+SG+QD +YLGQILQYSL M+RKLS+PAKED+MKR
Sbjct: 752 YEMVPKGWKEEIINNIDLEILLQVLESGTQDMQYLGQILQYSLGMLRKLSSPAKEDEMKR 811
Query: 621 SHEKLLNELAASSEVNDNGISSFVIAVIKGLRFTLEEIKQLQTEVSKARIQLMQPIIKGS 680
SH+KLL EL SE N++G +SFVIAVIKGLRFT+EE+K L+TEVS+ARIQL++PIIKGS
Sbjct: 812 SHDKLLGELTEHSECNNSGSNSFVIAVIKGLRFTMEELKALKTEVSRARIQLLEPIIKGS 871
Query: 681 AGVEYLQKAFTDRYGPPANASVSLPITKQWVSATKSIVEQEWSSH-------LESLQALP 733
GVEYLQKAF DRYG P+NASV+L T QW+S +K VE EW+ H L S +P
Sbjct: 872 GGVEYLQKAFADRYGFPSNASVALRSTAQWISTSKDTVEVEWNEHAQPFVATLRSGHGVP 931
Query: 734 ADHAQHVVPVLRXXXXXXXXXXXXXXXXXXXXXECKGEKIDKLTRVGLLQLISNVEGLNM 793
D Q +PV EC G+++D+L R+GLLQLIS +EG+ M
Sbjct: 932 -DQRQSTIPV----------------SDDTGLPECTGQRLDQLIRIGLLQLISGIEGVQM 974
Query: 794 QSTPETFQINLLRLRAVQDQFQKVIVIATSMLVLHQVLML---KIAPPELQNTISELYDA 850
QS ETF++N LRLR+VQ QFQ+VIVIATSMLV QVL I P EL++ S+L++
Sbjct: 975 QSVTETFKLNWLRLRSVQSQFQQVIVIATSMLVQRQVLATDDPNITPTELESATSQLFNT 1034
Query: 851 LVKLLDNNADASTKEIVEAMTR------SLASVGSLPEEQIQDTTELATKMLLKSLQAGD 904
L +LLDN D ST +I+E M R S ++ GS +E+ + ++ ++ LKSLQ D
Sbjct: 1035 LAELLDNFPDVSTAKIMEVMLRSSSSSSSGSTTGSPSDERTESRKQILARVFLKSLQTDD 1094
Query: 905 IVFGKVSRAVYFAFRXXX-XXXXXXXXXXXEAPLRRLGAAKLADRVVKAGEVLIKMAVIS 963
VF KVSR+VY AFR +A LRR+GA KL DRVV++ E+LI+ A IS
Sbjct: 1095 PVFKKVSRSVYCAFRAITLGGSGARGRKLADAALRRIGATKLTDRVVRSAEILIRAASIS 1154
Query: 964 EKVHGQWYKAL 974
++VHG WY L
Sbjct: 1155 QQVHGPWYNHL 1165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.127 0.347
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 25,499,551
Number of extensions: 896909
Number of successful extensions: 3190
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 3166
Number of HSP's successfully gapped: 3
Length of query: 976
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 866
Effective length of database: 11,292,261
Effective search space: 9779098026
Effective search space used: 9779098026
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 161 (66.6 bits)