Os02g0556700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : T-complex 11 family protein.
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Os02g0556700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : T-complex 11 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 284.45 | 0.792 | 9.53 | -1.67 | 0.263 | 1.24 | 2.66 | -1.5 | -1.06 | 0.577 | 25.69 | 946 | -- | -- |
| 286.57 | 0.788 | 9.48 | -1.27 | 0.29 | 1.15 | 2.4 | -- | -0.924 | 0.796 | 25.6 | 947 | -- | -- |
| 309.08 | 0.819 | 9.48 | -1.27 | 0.298 | 1.22 | -- | 0.378 | -0.919 | 2.66 | 25.6 | 947 | -- | -- |
| 309.07 | 0.819 | 9.49 | -1.39 | 0.319 | 1.22 | -- | -- | -0.969 | 3.01 | 25.62 | 943 | -- | -- |
| 314.39 | 0.826 | 9.49 | -1.32 | -- | 1.32 | -- | 0.293 | -0.967 | -- | 25.7 | 955 | -- | -- |
| 324.91 | 0.845 | 9.4 | -0.934 | 0.656 | -- | 2.49 | -- | -0.537 | 0.312 | -- | -- | -- | -- |
| 351.55 | 0.878 | 9.41 | -1.03 | 0.65 | -- | -- | -- | -0.55 | 0.569 | -- | -- | -- | -- |
| 314.41 | 0.826 | 9.5 | -1.41 | -- | 1.33 | -- | -- | -0.998 | -- | 25.64 | 955 | -- | -- |
| 359.1 | 0.883 | 9.5 | -- | 0.411 | 1.05 | -- | -- | -0.885 | 2.83 | 25.7 | 913 | -- | -- |
| 378.08 | 0.909 | 9.39 | -1.01 | -- | -- | -- | -- | -0.539 | -- | -- | -- | -- | -- |
| 379.63 | 0.911 | 9.38 | -- | 0.635 | -- | -- | -- | -0.435 | 0.49 | -- | -- | -- | -- |
| 363.19 | 0.888 | 9.45 | -- | -- | 1.01 | -- | -- | -0.765 | -- | 25.5 | 940 | -- | -- |
| 404.95 | 0.939 | 9.37 | -- | -- | -- | -- | -- | -0.427 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 279.57 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 20 | 9 |
| 5 | 280.16 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 4 |
| 15 | 280.57 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 20 | 280.69 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 20 | 9 |
| 42 | 282.01 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 13 |
| 43 | 282.01 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 18 | 11 |
| 51 | 282.57 | temperature | 25.0 | 720 | > th | dose independent | sin | 15 | NA |
| 56 | 282.91 | temperature | 25.0 | 720 | > th | dose independent | rect. | 15 | 16 |
| 63 | 283.06 | temperature | 25.0 | 720 | > th | dose independent | rect. | 16 | 20 |
| 76 | 283.63 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 96 | 284.15 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 21 | 4 |
| 102 | 284.25 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 104 | 284.29 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 120 | 284.63 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 16 |
| 132 | 284.95 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 140 | 285.06 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 21 | 4 |
| 148 | 285.15 | temperature | 25.0 | 720 | < th | dose independent | rect. | 15 | 9 |
| 161 | 285.30 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 193 | 285.67 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 2 |
| 210 | 285.93 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 232 | 286.36 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 236 | 286.50 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 264 | 286.89 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 291 | 287.21 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 15 |
| 333 | 287.65 | temperature | 25.0 | 720 | > th | dose independent | rect. | 11 | 18 |
| 335 | 287.70 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 3 | 17 |
| 338 | 287.73 | temperature | 25.0 | 4320 | > th | dose dependent | sin | 12 | NA |
| 373 | 288.05 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 385 | 288.19 | temperature | 25.0 | 4320 | > th | dose independent | sin | 12 | NA |
| 461 | 289.18 | temperature | 25.0 | 4320 | < th | dose independent | sin | 12 | NA |
| 478 | 289.34 | temperature | 25.0 | 720 | < th | dose independent | sin | 17 | NA |
| 485 | 289.38 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 496 | 289.50 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 4 |
| 503 | 289.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 19 |
| 505 | 289.56 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 511 | 289.58 | temperature | 25.0 | 720 | < th | dose independent | rect. | 3 | 21 |
| 517 | 289.61 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 522 | 289.64 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 531 | 289.67 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 5 | 13 |
| 539 | 289.72 | temperature | 25.0 | 270 | < th | dose independent | sin | 14 | NA |
| 541 | 289.74 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 21 |
| 547 | 289.77 | temperature | 25.0 | 720 | > th | dose dependent | sin | 12 | NA |
| 570 | 289.90 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 571 | 289.90 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 572 | 289.91 | atmosphere | 1005.0 | 720 | > th | dose independent | rect. | 5 | 2 |
| 624 | 290.29 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 636 | 290.37 | humidity | 70.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 673 | 290.59 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 717 | 290.94 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 5 | 12 |
| 747 | 291.17 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 3 | 15 |
| 749 | 291.17 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 3 | 15 |
| 757 | 291.23 | temperature | 20.0 | 30 | > th | dose independent | rect. | 20 | 9 |
| 760 | 291.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 3 | 15 |
| 776 | 291.34 | temperature | 25.0 | 720 | > th | dose independent | rect. | 3 | 6 |
| 827 | 291.54 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 11 |
| 882 | 291.84 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 2 | NA |
| 898 | 291.92 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 5 | 10 |
| 922 | 291.98 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 925 | 291.99 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 2 | 3 |
| 943 | 292.06 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 952 | 292.12 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 18 | 1 |