BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0404400 Os04g0404400|AK112111
         (295 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0404400  Conserved hypothetical protein                      570   e-163
Os03g0345300  Conserved hypothetical protein                      284   5e-77
Os05g0151100  Conserved hypothetical protein                      230   8e-61

>Os04g0404400 Conserved hypothetical protein
          Length = 295

 Score =  570 bits (1470), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 285/295 (96%), Positives = 285/295 (96%)

Query: 1   MDNEWARNRGFYXXXXXXXXXXLLPQSDVDLLEFPLNLEYLEAEFFCWSALGYGLDGIDA 60
           MDNEWARNRGFY          LLPQSDVDLLEFPLNLEYLEAEFFCWSALGYGLDGIDA
Sbjct: 1   MDNEWARNRGFYGGTGGGVVGGLLPQSDVDLLEFPLNLEYLEAEFFCWSALGYGLDGIDA 60

Query: 61  SLTGGGPAPVGAQTAALTPFVRDIATQFCYQEVGHLREIKQNVKGFPRPLLDISAANFGK 120
           SLTGGGPAPVGAQTAALTPFVRDIATQFCYQEVGHLREIKQNVKGFPRPLLDISAANFGK
Sbjct: 61  SLTGGGPAPVGAQTAALTPFVRDIATQFCYQEVGHLREIKQNVKGFPRPLLDISAANFGK 120

Query: 121 IVETAMNTTLDPPFNPYENSLNFLLASYIIPYVGLTGYVGANPRLLTPQARKLVAGLLGV 180
           IVETAMNTTLDPPFNPYENSLNFLLASYIIPYVGLTGYVGANPRLLTPQARKLVAGLLGV
Sbjct: 121 IVETAMNTTLDPPFNPYENSLNFLLASYIIPYVGLTGYVGANPRLLTPQARKLVAGLLGV 180

Query: 181 ESAQDAVIRALLYEHGLSRVASYGVGVAELTAHISELRNVLGRKGVKDEGLVVAPGQGPE 240
           ESAQDAVIRALLYEHGLSRVASYGVGVAELTAHISELRNVLGRKGVKDEGLVVAPGQGPE
Sbjct: 181 ESAQDAVIRALLYEHGLSRVASYGVGVAELTAHISELRNVLGRKGVKDEGLVVAPGQGPE 240

Query: 241 GQTVGNIIAGDRFSLAYDRTPEEILGVVYGSGDPAKAGGFFPQGADGRIARAFIA 295
           GQTVGNIIAGDRFSLAYDRTPEEILGVVYGSGDPAKAGGFFPQGADGRIARAFIA
Sbjct: 241 GQTVGNIIAGDRFSLAYDRTPEEILGVVYGSGDPAKAGGFFPQGADGRIARAFIA 295



>Os03g0345300 Conserved hypothetical protein
          Length = 353

 Score =  284 bits (727), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 142/267 (53%), Positives = 186/267 (69%)

Query: 28  DVDLLEFPLNLEYLEAEFFCWSALGYGLDGIDASLTGGGPAPVGAQTAALTPFVRDIATQ 87
           DVD + F LNLE+ EAEFF  +A G GLD +  +LT GGP PVGA+ A L      +  +
Sbjct: 77  DVDPVRFALNLEFAEAEFFLHAAFGVGLDHLAPNLTLGGPPPVGARKAGLDELTWRVCAE 136

Query: 88  FCYQEVGHLREIKQNVKGFPRPLLDISAANFGKIVETAMNTTLDPPFNPYENSLNFLLAS 147
           F YQE+GHLR I++ V G PRPL+D+SA NF ++++ A+   LDPPF+P  NSLNFLLA 
Sbjct: 137 FAYQEIGHLRAIQRTVGGIPRPLIDLSAHNFARVMDEAVGYHLDPPFDPDANSLNFLLAV 196

Query: 148 YIIPYVGLTGYVGANPRLLTPQARKLVAGLLGVESAQDAVIRALLYEHGLSRVASYGVGV 207
           Y+IPY+G+ GY G NP +     ++LVAGLL VES QDAV+R LL+EH    V+ YG  V
Sbjct: 197 YVIPYLGINGYTGTNPLIDGYATKRLVAGLLAVESGQDAVVRGLLFEHRRETVSPYGATV 256

Query: 208 AELTAHISELRNVLGRKGVKDEGLVVAPGQGPEGQTVGNIIAGDRFSLAYDRTPEEILGV 267
           AELT  +S LRN LG+ GVKDEGL+V    G EG+   NI++ +  SL+Y RTP E+L +
Sbjct: 257 AELTDRVSALRNKLGQCGVKDEGLIVPEQLGAEGKICTNILSANVDSLSYSRTPAELLRI 316

Query: 268 VYGSGDPAKAGGFFPQGADGRIARAFI 294
           +Y +GD    GGF+P+GA+GRIAR F+
Sbjct: 317 LYLTGDEHVPGGFYPEGANGRIARMFL 343



>Os05g0151100 Conserved hypothetical protein
          Length = 322

 Score =  230 bits (587), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 126/270 (46%), Positives = 170/270 (62%), Gaps = 16/270 (5%)

Query: 27  SDVDLLEFPLNLEYLEAEFFCWSALGYGLDGIDASLTGGGPAPVGAQTAALTPFVRDIAT 86
           SD+  ++F LN +++EAE+F   ALG G+D ID +L+GGGP P GA+ A L     ++A 
Sbjct: 64  SDMAHIQFLLNAKFVEAEWFLHGALGRGIDFIDGALSGGGPPPTGARKATLDFRATEVAA 123

Query: 87  QFCYQEVGHLREIKQNVKGFPRPLLDISAANFGKIVETAMNTTLDPPFNPYENSLNFLLA 146
           +  YQEVGH+R I Q++ GFPRP +D+S A F  +++ AM T LDPPF+PY +S+NFLLA
Sbjct: 124 ELGYQEVGHIRAITQSMGGFPRPAIDLSDAVFAAVMDDAMATRLDPPFDPYASSVNFLLA 183

Query: 147 SYIIPYVGLTGYVGANPRLLTPQARKLVAGLLGVESAQDAVIRALLYEHGLSRVASY-GV 205
           SYI+P++  +                L A +L VE+ QDAVIR +LYE     VA Y G 
Sbjct: 184 SYILPHITASA--------------ALQASMLAVEAGQDAVIRMMLYERADEVVAPYKGR 229

Query: 206 GVAELTAHISELRNVLGRKGVKDEGL-VVAPGQGPEGQTVGNIIAGDRFSLAYDRTPEEI 264
            VAE T  ISE RN   R G KDEG+ V+   QG E +TV NI+     SL + RTP E+
Sbjct: 230 TVAEFTRRISEWRNAASRCGAKDEGVKVLDRRQGAERRTVSNILGAGDDSLGFARTPAEV 289

Query: 265 LGVVYGSGDPAKAGGFFPQGADGRIARAFI 294
           L ++YGSG+    GGF P+G +G IA+ F 
Sbjct: 290 LRILYGSGNEQVPGGFLPRGGNGTIAKGFF 319



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.319    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,582,712
Number of extensions: 464541
Number of successful extensions: 975
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 972
Number of HSP's successfully gapped: 3
Length of query: 295
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 195
Effective length of database: 11,814,401
Effective search space: 2303808195
Effective search space used: 2303808195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)