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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0404400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.41 (0.0258) R2 : 0.00465
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0792 (0.0543) R2dN8 : 0.006 R2N8 : 0.00465
σ : 0.485
deviance : 108.11
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
89.65 0.445 3.38 0.199 0.447 0.453 0.206 0.977 0.000686 6.02 66 3312 -- --
91.05 0.444 3.38 0.183 0.461 0.526 0.032 -- 0.0168 5.95 66.17 3307 -- --
89.75 0.441 3.38 0.2 0.449 0.46 -- 0.919 0.00141 5.99 66.05 3311 -- --
91.05 0.444 3.38 0.183 0.462 0.527 -- -- 0.0169 5.96 66.26 3311 -- --
98.92 0.463 3.38 0.22 -- 0.338 -- 1.23 0.0144 -- 65.66 2771 -- --
97.88 0.464 3.4 0.198 0.416 -- 0.117 -- -0.065 5.78 -- -- -- --
97.91 0.463 3.4 0.199 0.417 -- -- -- -0.0655 5.77 -- -- -- --
100.81 0.468 3.4 0.171 -- 0.441 -- -- -0.0173 -- 67.05 2887 -- --
91.83 0.446 3.39 -- 0.477 0.54 -- -- -0.038 5.93 67.02 3317 -- --
106.93 0.483 3.41 0.212 -- -- -- -- -0.0556 -- -- -- -- --
98.95 0.465 3.4 -- 0.42 -- -- -- -0.0876 5.75 -- -- -- --
101.55 0.469 3.4 -- -- 0.448 -- -- -0.0351 -- 67.72 2863 -- --
108.11 0.485 3.41 -- -- -- -- -- -0.0792 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 88.25 temperature 25 30 < th dose dependent rect. 4 1
2 88.73 temperature 30 4320 > th dose dependent rect. 18 1
16 88.89 humidity 50 4320 < th dose dependent rect. 16 1
18 89.39 humidity 50 1440 < th dose independent rect. 16 1
20 89.53 temperature 30 720 > th dose dependent rect. 18 15
22 89.88 temperature 30 720 > th dose dependent rect. 18 1
50 90.06 humidity 90 90 > th dose dependent rect. 3 2
51 90.09 temperature 20 90 > th dose dependent rect. 3 2
52 90.18 temperature 20 90 > th dose independent rect. 3 2
54 90.30 temperature 30 720 < th dose independent rect. 18 8
55 90.38 wind 9 4320 < th dose independent rect. 3 3
56 90.52 wind 1 43200 > th dose dependent rect. 2 1
57 90.54 humidity 70 720 > th dose independent rect. 18 8
58 90.54 wind 5 43200 < th dose dependent rect. 2 1
59 90.59 humidity 70 4320 < th dose independent rect. 18 2
70 90.61 wind 3 43200 > th dose independent rect. 2 2
73 90.69 humidity 50 1440 > th dose independent rect. 16 1
77 90.76 humidity 70 720 < th dose independent rect. 19 12
78 90.77 humidity 70 720 > th dose independent rect. 18 15
79 90.78 humidity 70 720 < th dose independent rect. 19 1
90 90.78 atmosphere 995 30 > th dose independent rect. 5 23
91 90.79 wind 3 43200 < th dose independent rect. 2 2
92 90.79 humidity 90 14400 > th dose dependent rect. 21 3
93 90.81 radiation 20 1440 < th dose independent rect. 15 17
95 90.82 temperature 10 1440 > th dose independent rect. 3 3
98 90.82 temperature 30 1440 < th dose independent rect. 3 3
102 90.82 humidity 50 1440 > th dose independent rect. 3 3
111 90.82 atmosphere 995 1440 > th dose independent rect. 3 3
112 90.82 radiation 20 1440 < th dose independent rect. 3 3
121 90.82 temperature 10 1440 > th dose independent rect. 6 21
124 90.83 humidity 90 14400 < th dose independent rect. 21 2
126 90.85 humidity 80 14400 > th dose independent rect. 8 1
127 90.85 radiation 20 1440 > th dose dependent rect. 16 16
128 90.86 radiation 20 1440 > th dose independent rect. 15 17
129 90.87 humidity 70 4320 > th dose independent rect. 18 2
130 90.87 humidity 70 4320 > th dose independent rect. 18 9
135 90.88 humidity 70 4320 > th dose independent rect. 18 7
144 90.89 wind 1 10 > th dose independent rect. 23 13
147 90.90 temperature 25 720 > th dose dependent rect. 20 3
150 90.91 humidity 70 4320 < th dose dependent rect. 17 3
162 90.93 humidity 70 14400 < th dose independent rect. 17 15
164 90.93 temperature 25 720 > th dose dependent rect. 20 1
167 90.95 humidity 90 14400 > th dose dependent rect. 22 1
171 90.96 wind 3 10 < th dose dependent rect. 2 8
186 91.01 humidity 70 14400 < th dose independent rect. 17 19
187 91.01 humidity 70 720 < th dose dependent rect. 19 1
198 91.02 humidity 90 14400 > th dose independent rect. 21 3
202 91.03 humidity 90 14400 < th dose independent rect. 18 6
209 91.07 humidity 70 14400 < th dose independent rect. 17 17
216 91.11 humidity 70 14400 < th dose independent sin 11 NA
245 91.15 humidity 90 14400 > th dose dependent rect. 12 13
248 91.15 humidity 90 14400 > th dose dependent rect. 10 15
257 91.17 humidity 70 14400 > th dose independent rect. 18 18
264 91.18 humidity 70 1440 > th dose independent rect. 18 18
265 91.18 radiation 20 1440 > th dose dependent rect. 6 2
287 91.21 humidity 70 1440 < th dose independent rect. 10 1
296 91.22 wind 1 43200 > th dose dependent rect. 1 6
317 91.24 radiation 30 1440 > th dose independent rect. 14 19
344 91.26 humidity 70 14400 > th dose independent rect. 18 15
347 91.26 wind 3 43200 > th dose dependent rect. 4 3
349 91.27 atmosphere 1005 30 > th dose independent rect. 4 1
354 91.27 humidity 90 14400 > th dose dependent sin 17 NA
362 91.29 wind 1 90 < th dose independent rect. 4 1
367 91.30 humidity 80 1440 > th dose independent rect. 7 2
380 91.31 humidity 70 1440 < th dose independent rect. 18 18
398 91.33 humidity 70 14400 > th dose independent sin 10 NA
413 91.33 wind 3 90 < th dose dependent rect. 2 3
419 91.34 humidity 80 14400 < th dose independent rect. 8 1
425 91.34 humidity 70 1440 < th dose independent rect. 16 20
426 91.34 humidity 80 14400 > th dose dependent rect. 18 2
431 91.34 radiation 20 1440 > th dose dependent rect. 14 19
438 91.36 humidity 90 30 > th dose independent rect. 4 1
439 91.36 humidity 90 90 > th dose independent rect. 2 3
441 91.36 humidity 90 14400 < th dose independent rect. 10 14
444 91.36 humidity 50 14400 > th dose dependent rect. 9 14
463 91.37 humidity 70 1440 > th dose independent rect. 16 20
465 91.37 humidity 70 14400 < th dose dependent sin 12 NA
469 91.37 wind 9 43200 < th dose dependent rect. 1 6
476 91.38 humidity 90 14400 < th dose independent sin 17 NA
478 91.38 humidity 70 1440 > th dose independent rect. 10 1
493 91.39 humidity 80 14400 < th dose dependent rect. 9 11
500 91.40 humidity 90 14400 > th dose independent sin 16 NA
514 91.40 humidity 90 14400 > th dose dependent rect. 6 19
524 91.41 humidity 50 14400 > th dose dependent rect. 9 11
527 91.41 humidity 90 14400 < th dose dependent rect. 9 14
535 91.42 humidity 90 14400 < th dose independent rect. 7 19
553 91.43 humidity 80 1440 < th dose independent rect. 7 2
564 91.43 humidity 50 14400 > th dose dependent sin 20 NA
567 91.43 wind 1 90 < th dose dependent rect. 4 1
645 91.46 humidity 50 4320 > th dose independent rect. 15 11
647 91.46 humidity 50 4320 > th dose independent rect. 15 14
648 91.46 humidity 50 4320 > th dose independent rect. 15 16
654 91.46 temperature 20 90 < th dose dependent rect. 2 2
655 91.46 humidity 60 14400 > th dose dependent rect. 17 2
674 91.47 humidity 70 1440 < th dose independent sin 11 NA
679 91.47 humidity 50 4320 > th dose independent rect. 15 6
680 91.47 humidity 50 4320 > th dose independent rect. 15 8
686 91.47 humidity 90 14400 > th dose independent rect. 9 18
732 91.48 humidity 90 14400 > th dose independent rect. 10 15
735 91.48 humidity 90 14400 < th dose dependent sin 20 NA
766 91.49 wind 1 10 < th dose independent rect. 2 4
803 91.50 wind 1 10 < th dose independent rect. 2 8
816 91.50 humidity 90 14400 < th dose independent rect. 4 20
846 91.50 humidity 70 14400 < th dose dependent rect. 13 18
855 91.51 atmosphere 1005 90 > th dose independent rect. 2 3
862 91.51 humidity 90 14400 < th dose independent rect. 2 21
867 91.51 atmosphere 1015 30 < th dose dependent rect. 4 1
915 91.52 wind 9 30 < th dose independent rect. 4 1
916 91.52 temperature 10 30 > th dose independent rect. 4 1
918 91.52 temperature 25 30 < th dose independent rect. 4 1
920 91.52 humidity 50 30 > th dose independent rect. 4 1
925 91.52 atmosphere 1010 30 < th dose independent rect. 4 1
927 91.52 radiation 1 30 < th dose independent rect. 4 1
948 91.52 temperature 10 30 > th dose independent rect. 5 23
955 91.52 radiation 30 30 < th dose dependent rect. 4 1