BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0404400 Os04g0404400|AK112111
         (295 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G47980.1  | chr1:17691985-17693818 REVERSE LENGTH=316          336   8e-93
AT3G62730.1  | chr3:23208003-23209436 REVERSE LENGTH=318          286   1e-77

>AT1G47980.1 | chr1:17691985-17693818 REVERSE LENGTH=316
          Length = 315

 Score =  336 bits (862), Expect = 8e-93,   Method: Compositional matrix adjust.
 Identities = 163/268 (60%), Positives = 199/268 (74%)

Query: 27  SDVDLLEFPLNLEYLEAEFFCWSALGYGLDGIDASLTGGGPAPVGAQTAALTPFVRDIAT 86
            D  LLEFPLNLEYLEAEFF + ALG GLD +  +LT GGP+P+GAQ A L P  RDI  
Sbjct: 42  QDRKLLEFPLNLEYLEAEFFLFGALGLGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIIL 101

Query: 87  QFCYQEVGHLREIKQNVKGFPRPLLDISAANFGKIVETAMNTTLDPPFNPYENSLNFLLA 146
           QF +QEVGHLR IK+ VKGF RP LD+S   F K+++ A      PPFNPY NS N+L+A
Sbjct: 102 QFAWQEVGHLRAIKKTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIA 161

Query: 147 SYIIPYVGLTGYVGANPRLLTPQARKLVAGLLGVESAQDAVIRALLYEHGLSRVASYGVG 206
           SY++PYVGLTGYVGANP+L  P +RKLVAGLLGVES QDAVIR +LY      V  YGV 
Sbjct: 162 SYLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVT 221

Query: 207 VAELTAHISELRNVLGRKGVKDEGLVVAPGQGPEGQTVGNIIAGDRFSLAYDRTPEEILG 266
           VA  T  IS+LRN LG+ GVKDEGL+V    G EGQ +GN++ G+  SL++DRTPEEIL 
Sbjct: 222 VAAFTDKISDLRNKLGKAGVKDEGLIVPKFMGAEGQVIGNVLVGNELSLSFDRTPEEILR 281

Query: 267 VVYGSGDPAKAGGFFPQGADGRIARAFI 294
           +VYGSG+ +  GGF+P+GADG IA++++
Sbjct: 282 IVYGSGNESVPGGFYPKGADGEIAKSYL 309



>AT3G62730.1 | chr3:23208003-23209436 REVERSE LENGTH=318
          Length = 317

 Score =  286 bits (731), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 149/272 (54%), Positives = 185/272 (68%), Gaps = 1/272 (0%)

Query: 24  LPQSDVDLLEFPLNLEYLEAEFFCWSALGYGLDGIDASLTGGGPAPVGAQTAALTPFVRD 83
           +  SDVD + F +NLE+ EAEFF   A G GLD  +A+L  GGP P+GA+ A L P    
Sbjct: 30  ISASDVDRVHFAMNLEFTEAEFFLKGATGKGLDAYNATLAKGGPPPIGAKKANLDPITNR 89

Query: 84  IATQFCYQEVGHLREIKQNVKGFPRPLLDISAANFGKIVETAMNTTLDPPFNPYENSLNF 143
           I  +F YQE+GHLR I     G PRPL++++  NF   ++ A+    +P F+PY NSLN+
Sbjct: 90  IIEEFGYQEIGHLRAITDMTGGIPRPLINLTRENFAVFMDRAVGRKSNPRFDPYANSLNY 149

Query: 144 LLASYIIPYVGLTGYVGANPRLLTPQARKLVAGLLGVESAQDAVIRALLYEHGLSRVASY 203
           LLASY IPYVGLTGYVG  P L+    +KLVAGLLGVES QDAVIR LLYE    +V  Y
Sbjct: 150 LLASYYIPYVGLTGYVGTIPYLVYFNIKKLVAGLLGVESGQDAVIRTLLYERQNEKVEEY 209

Query: 204 -GVGVAELTAHISELRNVLGRKGVKDEGLVVAPGQGPEGQTVGNIIAGDRFSLAYDRTPE 262
            GV VAELT  IS LRN LG  G+KDEGL V    G E +T  NI++ D +SL+YDRT +
Sbjct: 210 GGVTVAELTNEISNLRNELGMCGIKDEGLCVPLWLGAENRTTSNILSADPYSLSYDRTAQ 269

Query: 263 EILGVVYGSGDPAKAGGFFPQGADGRIARAFI 294
           EIL V+YG+GD  + GGF+P GA+GRIAR F+
Sbjct: 270 EILRVMYGTGDEHRPGGFWPCGANGRIARMFL 301



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.140    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,473,061
Number of extensions: 274314
Number of successful extensions: 508
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 2
Length of query: 295
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 197
Effective length of database: 8,419,801
Effective search space: 1658700797
Effective search space used: 1658700797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)