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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0345300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0316) R2 : 0.000121
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0156 (0.0665) R2dN8 : 0.000157 R2N8 : 0.000121
σ : 0.594
deviance : 162.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
147.71 0.571 3.11 -0.0774 1.04 -1.57 -1.6 2.41 0.0372 17.5 0.01406 744 -- --
149.47 0.569 3.13 -0.267 0.919 -1.37 0.0118 -- -0.0299 17.4 0.01997 724 -- --
149.14 0.569 3.12 -0.179 0.844 -1.3 -- 0.711 0.0363 17.3 0.0002542 729 -- --
149.19 0.569 3.13 -0.208 0.948 -1.4 -- -- -0.00655 17.3 0.0001354 730 -- --
155.07 0.58 3.12 0.0172 -- -1.13 -- 0.466 0.0982 -- 0.009998 1317 -- --
156.7 0.587 3.12 -0.353 0.203 -- 0.0592 -- -0.0569 7.99 -- -- -- --
156.71 0.586 3.12 -0.351 0.203 -- -- -- -0.057 7.96 -- -- -- --
151.8 0.574 3.11 -0.166 -- -0.75 -- -- 0.0147 -- 0.009117 1311 -- --
149.16 0.569 3.1 -- 1.36 -1.93 -- -- 0.0662 17.4 7.18e-08 720 -- --
158.96 0.589 3.12 -0.349 -- -- -- -- -0.0543 -- -- -- -- --
159.96 0.592 3.11 -- 0.201 -- -- -- -0.0179 8.09 -- -- -- --
152.41 0.575 3.1 -- -- -0.831 -- -- 0.0406 -- 0.008344 1315 -- --
162.17 0.594 3.11 -- -- -- -- -- -0.0156 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 143.99 radiation 1 720 < th dose independent rect. 13 1
2 143.99 radiation 1 720 < th dose dependent rect. 13 1
3 144.27 humidity 90 720 > th dose independent rect. 11 2
5 144.30 humidity 90 720 > th dose dependent rect. 11 2
15 145.27 temperature 25 720 < th dose independent rect. 13 1
16 145.43 radiation 1 720 < th dose dependent rect. 2 22
18 145.61 atmosphere 1005 30 > th dose independent rect. 13 1
32 146.31 humidity 90 270 > th dose dependent rect. 20 1
38 146.49 humidity 50 720 > th dose dependent rect. 12 2
42 146.57 radiation 1 720 < th dose independent rect. 10 13
46 146.63 radiation 1 720 < th dose dependent rect. 11 12
53 146.77 radiation 1 1440 < th dose independent rect. 2 3
55 146.78 radiation 1 720 < th dose dependent rect. 11 19
66 146.91 radiation 1 720 > th dose independent rect. 14 4
79 147.12 radiation 1 720 < th dose independent rect. 2 22
116 147.40 radiation 1 720 > th dose independent rect. 8 10
123 147.45 radiation 1 720 < th dose dependent rect. 2 15
125 147.46 temperature 25 720 > th dose independent rect. 14 3
127 147.47 radiation 10 1440 < th dose dependent rect. 2 3
128 147.48 humidity 80 1440 < th dose dependent rect. 23 1
137 147.58 radiation 1 1440 > th dose independent rect. 13 1
140 147.59 radiation 1 1440 > th dose independent rect. 4 1
152 147.59 radiation 1 1440 > th dose dependent rect. 4 1
170 147.71 wind 5 10 > th dose independent rect. 13 1
189 147.80 radiation 1 720 < th dose independent rect. 11 19
206 147.83 radiation 1 90 > th dose dependent rect. 4 2
220 147.86 radiation 20 14400 < th dose independent rect. 2 5
222 147.88 atmosphere 995 43200 > th dose independent rect. 6 2
223 147.88 radiation 1 720 < th dose dependent sin 22 NA
231 147.97 radiation 20 14400 < th dose independent rect. 22 9
232 147.97 radiation 20 14400 < th dose independent rect. 19 12
238 147.99 radiation 1 1440 > th dose independent rect. 10 4
241 148.01 radiation 20 14400 < th dose independent rect. 6 1
289 148.23 humidity 80 1440 < th dose independent rect. 23 1
295 148.26 radiation 1 720 < th dose dependent rect. 18 23
301 148.29 atmosphere 995 43200 > th dose independent rect. 5 5
302 148.30 atmosphere 995 43200 < th dose independent rect. 3 11
306 148.32 radiation 1 1440 > th dose independent rect. 8 5
315 148.35 radiation 40 14400 > th dose dependent rect. 15 18
316 148.36 radiation 1 720 > th dose independent sin 21 NA
317 148.36 atmosphere 995 43200 < th dose independent rect. 5 4
321 148.36 atmosphere 995 43200 < th dose dependent rect. 23 15
326 148.37 humidity 80 1440 < th dose independent rect. 11 2
328 148.37 atmosphere 995 43200 < th dose dependent rect. 2 8
333 148.39 radiation 1 720 < th dose independent sin 21 NA
334 148.39 radiation 1 1440 < th dose independent rect. 23 6
339 148.40 atmosphere 995 43200 < th dose dependent rect. 3 6
346 148.43 atmosphere 1015 4320 > th dose dependent rect. 2 4
356 148.45 atmosphere 995 43200 < th dose independent rect. 4 7
363 148.47 radiation 40 14400 > th dose dependent rect. 7 2
382 148.48 atmosphere 995 43200 < th dose dependent sin 6 NA
385 148.48 atmosphere 995 43200 < th dose dependent rect. 1 10
404 148.51 atmosphere 995 43200 < th dose dependent rect. 5 3
420 148.53 atmosphere 995 43200 > th dose independent rect. 4 7
437 148.55 radiation 40 14400 < th dose dependent rect. 2 4
458 148.59 radiation 1 1440 < th dose independent rect. 19 10
463 148.60 atmosphere 1015 4320 > th dose dependent rect. 3 1
469 148.62 atmosphere 1000 10 < th dose independent rect. 5 1
478 148.62 atmosphere 1000 10 < th dose dependent rect. 5 1
487 148.63 humidity 60 720 > th dose independent rect. 13 1
518 148.68 temperature 25 1440 < th dose independent rect. 15 2
524 148.68 radiation 10 14400 < th dose dependent rect. 2 4
531 148.69 radiation 40 14400 < th dose dependent rect. 23 7
532 148.69 radiation 40 14400 < th dose dependent rect. 18 12
539 148.70 radiation 10 14400 < th dose dependent rect. 23 7
548 148.72 atmosphere 995 43200 > th dose independent rect. 2 12
555 148.72 radiation 10 14400 < th dose dependent rect. 20 10
577 148.75 radiation 40 14400 < th dose dependent rect. 20 10
579 148.76 wind 9 43200 < th dose independent rect. 1 1
584 148.76 wind 9 43200 > th dose dependent rect. 1 1
597 148.77 radiation 20 14400 > th dose dependent rect. 17 14
621 148.81 radiation 40 14400 < th dose independent rect. 15 18
636 148.83 radiation 30 14400 < th dose independent rect. 16 16
655 148.86 radiation 1 14400 > th dose dependent rect. 18 12
658 148.87 radiation 1 720 < th dose dependent no NA NA
663 148.88 temperature 30 720 < th dose dependent rect. 12 1
682 148.93 radiation 1 720 < th dose independent rect. 2 15
707 148.97 radiation 40 14400 > th dose dependent rect. 14 2
712 148.97 radiation 10 1440 < th dose dependent rect. 23 6
726 148.98 radiation 1 10 < th dose independent rect. 13 1
738 148.98 atmosphere 1000 10 > th dose dependent rect. 13 1
739 148.98 radiation 1 10 < th dose dependent rect. 13 1
753 148.99 radiation 1 14400 > th dose dependent rect. 4 2
811 149.07 atmosphere 995 43200 < th dose dependent rect. 12 22
813 149.08 humidity 60 14400 > th dose independent rect. 9 1
832 149.10 humidity 60 14400 < th dose dependent rect. 16 1
846 149.13 wind 9 43200 > th dose independent rect. 1 1
847 149.13 humidity 60 14400 > th dose independent rect. 7 3
858 149.14 humidity 60 14400 > th dose independent rect. 2 8
875 149.16 radiation 30 14400 < th dose independent rect. 16 5
876 149.16 humidity 60 14400 > th dose independent rect. 4 6
887 149.17 radiation 1 720 > th dose independent rect. 14 22
900 149.19 radiation 30 14400 < th dose independent rect. 16 8
903 149.20 radiation 30 14400 < th dose independent rect. 16 2
907 149.20 radiation 20 14400 > th dose dependent rect. 6 1
923 149.21 radiation 40 14400 < th dose independent rect. 2 7
939 149.23 radiation 30 14400 > th dose dependent rect. 16 1
965 149.25 radiation 40 14400 < th dose independent rect. 7 2
970 149.25 radiation 40 14400 > th dose independent rect. 15 17
980 149.26 radiation 30 14400 > th dose independent rect. 16 1
992 149.26 radiation 40 14400 < th dose independent rect. 23 10
997 149.26 radiation 40 14400 < th dose independent rect. 20 13