BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0345300 Os03g0345300|AK108277
         (353 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0345300  Conserved hypothetical protein                      635   0.0  
Os04g0404400  Conserved hypothetical protein                      256   1e-68
Os05g0151100  Conserved hypothetical protein                      243   1e-64

>Os03g0345300 Conserved hypothetical protein
          Length = 353

 Score =  635 bits (1638), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/353 (89%), Positives = 317/353 (89%)

Query: 1   MNNLQSEMASPRICCSAXXXXXXXXXCNAGDHPACPAAWSAAVGAELFHXXXXXXXXXEA 60
           MNNLQSEMASPRICCSA         CNAGDHPACPAAWSAAVGAELFH         EA
Sbjct: 1   MNNLQSEMASPRICCSALLVLLLVSSCNAGDHPACPAAWSAAVGAELFHGGVGGGGGGEA 60

Query: 61  QCSAAAPHTPVAVFAHDVDPVRXXXXXXXXXXXXXXXXXXGVGLDHLAPNLTLGGPPPVG 120
           QCSAAAPHTPVAVFAHDVDPVR                  GVGLDHLAPNLTLGGPPPVG
Sbjct: 61  QCSAAAPHTPVAVFAHDVDPVRFALNLEFAEAEFFLHAAFGVGLDHLAPNLTLGGPPPVG 120

Query: 121 ARKAGLDELTWRVCAEFAYQEIGHLRAIQRTVGGIPRPLIDLSAHNFARVMDEAVGYHLD 180
           ARKAGLDELTWRVCAEFAYQEIGHLRAIQRTVGGIPRPLIDLSAHNFARVMDEAVGYHLD
Sbjct: 121 ARKAGLDELTWRVCAEFAYQEIGHLRAIQRTVGGIPRPLIDLSAHNFARVMDEAVGYHLD 180

Query: 181 PPFDPDANSLNFLLAVYVIPYLGINGYTGTNPLIDGYATKRLVAGLLAVESGQDAVVRGL 240
           PPFDPDANSLNFLLAVYVIPYLGINGYTGTNPLIDGYATKRLVAGLLAVESGQDAVVRGL
Sbjct: 181 PPFDPDANSLNFLLAVYVIPYLGINGYTGTNPLIDGYATKRLVAGLLAVESGQDAVVRGL 240

Query: 241 LFEHRRETVSPYGATVAELTDRVSALRNKLGQCGVKDEGLIVPEQLGAEGKICTNILSAN 300
           LFEHRRETVSPYGATVAELTDRVSALRNKLGQCGVKDEGLIVPEQLGAEGKICTNILSAN
Sbjct: 241 LFEHRRETVSPYGATVAELTDRVSALRNKLGQCGVKDEGLIVPEQLGAEGKICTNILSAN 300

Query: 301 VDSLSYSRTPAELLRILYLTGDEHVPGGFYPEGANGRIARMFLKKPPRINHGV 353
           VDSLSYSRTPAELLRILYLTGDEHVPGGFYPEGANGRIARMFLKKPPRINHGV
Sbjct: 301 VDSLSYSRTPAELLRILYLTGDEHVPGGFYPEGANGRIARMFLKKPPRINHGV 353



>Os04g0404400 Conserved hypothetical protein
          Length = 295

 Score =  256 bits (655), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/243 (52%), Positives = 169/243 (69%)

Query: 101 GVGLDHLAPNLTLGGPPPVGARKAGLDELTWRVCAEFAYQEIGHLRAIQRTVGGIPRPLI 160
           G GLD +  +LT GGP PVGA+ A L      +  +F YQE+GHLR I++ V G PRPL+
Sbjct: 52  GYGLDGIDASLTGGGPAPVGAQTAALTPFVRDIATQFCYQEVGHLREIKQNVKGFPRPLL 111

Query: 161 DLSAHNFARVMDEAVGYHLDPPFDPDANSLNFLLAVYVIPYLGINGYTGTNPLIDGYATK 220
           D+SA NF ++++ A+   LDPPF+P  NSLNFLLA Y+IPY+G+ GY G NP +     +
Sbjct: 112 DISAANFGKIVETAMNTTLDPPFNPYENSLNFLLASYIIPYVGLTGYVGANPRLLTPQAR 171

Query: 221 RLVAGLLAVESGQDAVVRGLLFEHRRETVSPYGATVAELTDRVSALRNKLGQCGVKDEGL 280
           +LVAGLL VES QDAV+R LL+EH    V+ YG  VAELT  +S LRN LG+ GVKDEGL
Sbjct: 172 KLVAGLLGVESAQDAVIRALLYEHGLSRVASYGVGVAELTAHISELRNVLGRKGVKDEGL 231

Query: 281 IVPEQLGAEGKICTNILSANVDSLSYSRTPAELLRILYLTGDEHVPGGFYPEGANGRIAR 340
           +V    G EG+   NI++ +  SL+Y RTP E+L ++Y +GD    GGF+P+GA+GRIAR
Sbjct: 232 VVAPGQGPEGQTVGNIIAGDRFSLAYDRTPEEILGVVYGSGDPAKAGGFFPQGADGRIAR 291

Query: 341 MFL 343
            F+
Sbjct: 292 AFI 294



>Os05g0151100 Conserved hypothetical protein
          Length = 322

 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 134/287 (46%), Positives = 178/287 (62%), Gaps = 17/287 (5%)

Query: 61  QCSAAAPHT-PVAVFAHDVDPVRXXXXXXXXXXXXXXXXXXGVGLDHLAPNLTLGGPPPV 119
           +C A+ P    VAV+  D+  ++                  G G+D +   L+ GGPPP 
Sbjct: 48  RCHASPPRRGAVAVYPSDMAHIQFLLNAKFVEAEWFLHGALGRGIDFIDGALSGGGPPPT 107

Query: 120 GARKAGLDELTWRVCAEFAYQEIGHLRAIQRTVGGIPRPLIDLSAHNFARVMDEAVGYHL 179
           GARKA LD     V AE  YQE+GH+RAI +++GG PRP IDLS   FA VMD+A+   L
Sbjct: 108 GARKATLDFRATEVAAELGYQEVGHIRAITQSMGGFPRPAIDLSDAVFAAVMDDAMATRL 167

Query: 180 DPPFDPDANSLNFLLAVYVIPYLGINGYTGTNPLIDGYATKRLVAGLLAVESGQDAVVRG 239
           DPPFDP A+S+NFLLA Y++P++               A+  L A +LAVE+GQDAV+R 
Sbjct: 168 DPPFDPYASSVNFLLASYILPHI--------------TASAALQASMLAVEAGQDAVIRM 213

Query: 240 LLFEHRRETVSPY-GATVAELTDRVSALRNKLGQCGVKDEGL-IVPEQLGAEGKICTNIL 297
           +L+E   E V+PY G TVAE T R+S  RN   +CG KDEG+ ++  + GAE +  +NIL
Sbjct: 214 MLYERADEVVAPYKGRTVAEFTRRISEWRNAASRCGAKDEGVKVLDRRQGAERRTVSNIL 273

Query: 298 SANVDSLSYSRTPAELLRILYLTGDEHVPGGFYPEGANGRIARMFLK 344
            A  DSL ++RTPAE+LRILY +G+E VPGGF P G NG IA+ F +
Sbjct: 274 GAGDDSLGFARTPAEVLRILYGSGNEQVPGGFLPRGGNGTIAKGFFQ 320



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.138    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,449,500
Number of extensions: 514125
Number of successful extensions: 867
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 863
Number of HSP's successfully gapped: 3
Length of query: 353
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 251
Effective length of database: 11,709,973
Effective search space: 2939203223
Effective search space used: 2939203223
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)