BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0228100 Os04g0228100|AK059410
         (318 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0228100  Conserved hypothetical protein                      610   e-175
Os05g0315200  Conserved hypothetical protein                      126   2e-29
Os11g0118800  Similar to Expressed protein-like protein           115   4e-26

>Os04g0228100 Conserved hypothetical protein
          Length = 318

 Score =  610 bits (1573), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 308/318 (96%), Positives = 308/318 (96%)

Query: 1   MDATAPLLSPASDDRFWDRLRTRVDTILEDRRLVAPPAATCGVESERGKRLREDSLMLVR 60
           MDATAPLLSPASDDRFWDRLRTRVDTILEDRRLVAPPAATCGVESERGKRLREDSLMLVR
Sbjct: 1   MDATAPLLSPASDDRFWDRLRTRVDTILEDRRLVAPPAATCGVESERGKRLREDSLMLVR 60

Query: 61  GLDSVAASLAQLSDTLTAAQKGVNALATCSSQARXXXXXXXXXXPKAKRRCSLAETVSFD 120
           GLDSVAASLAQLSDTLTAAQKGVNALATCSSQAR          PKAKRRCSLAETVSFD
Sbjct: 61  GLDSVAASLAQLSDTLTAAQKGVNALATCSSQARECERGDEEEEPKAKRRCSLAETVSFD 120

Query: 121 GETPVAGADSGEGSEKEELAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAA 180
           GETPVAGADSGEGSEKEELAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAA
Sbjct: 121 GETPVAGADSGEGSEKEELAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAA 180

Query: 181 LARELKNIKSELHFMQERCGLLEEENKRLREGYDNGVPPEEDDLVRLQLEALLAEKSRLA 240
           LARELKNIKSELHFMQERCGLLEEENKRLREGYDNGVPPEEDDLVRLQLEALLAEKSRLA
Sbjct: 181 LARELKNIKSELHFMQERCGLLEEENKRLREGYDNGVPPEEDDLVRLQLEALLAEKSRLA 240

Query: 241 QENANLSRENQSLIQLVEYHQLTSQDLAESYEDVMEGMRLDFSSPLGKIDSDEEGERENR 300
           QENANLSRENQSLIQLVEYHQLTSQDLAESYEDVMEGMRLDFSSPLGKIDSDEEGERENR
Sbjct: 241 QENANLSRENQSLIQLVEYHQLTSQDLAESYEDVMEGMRLDFSSPLGKIDSDEEGERENR 300

Query: 301 RVAVTPSDKLEALESSDE 318
           RVAVTPSDKLEALESSDE
Sbjct: 301 RVAVTPSDKLEALESSDE 318



>Os05g0315200 Conserved hypothetical protein
          Length = 419

 Score =  126 bits (317), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 66/118 (55%), Positives = 87/118 (73%), Gaps = 3/118 (2%)

Query: 162 TNLKRARNLAVSMAGRAAALARELKNIKSELHFMQERCGLLEEENKRLREGYDNGVPPEE 221
           T LK +R++A +MA +A  L RELK +K++L F +ERC  LE+ENK LRE +D G  PE+
Sbjct: 240 TQLKASRDVANAMAAKAKLLLRELKTVKADLAFAKERCAQLEDENKILRESHDKGDNPED 299

Query: 222 DDLVRLQLEALLAEKSRLAQENANLSRENQSLIQLVEYHQLTSQDLA---ESYEDVME 276
           DDL+RLQLE LLAEK+RLA EN+  +REN+ L ++VEYHQLT QD+    E  E+V E
Sbjct: 300 DDLIRLQLETLLAEKARLAHENSVYARENRFLREIVEYHQLTMQDVIYVDEGIEEVTE 357



>Os11g0118800 Similar to Expressed protein-like protein
          Length = 372

 Score =  115 bits (288), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 2/131 (1%)

Query: 139 LAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAALARELKNIKSELHFMQER 198
           LA D  LR  N         A+ T LK +R++A +MA +A  + RELK +K++L F ++R
Sbjct: 163 LAFDT-LRPPNLSNDQAETAAQETQLKASRDVANAMAAKAKLVLRELKTVKADLAFAKQR 221

Query: 199 CGLLEEENKRLREGYDNGVPPEEDD-LVRLQLEALLAEKSRLAQENANLSRENQSLIQLV 257
           C  LEEENK LRE    G   EEDD L+R+QLE LLAEKSRLAQEN+  +REN+ L ++V
Sbjct: 222 CAQLEEENKFLREAKQKGSKTEEDDDLIRVQLETLLAEKSRLAQENSMYARENRFLREIV 281

Query: 258 EYHQLTSQDLA 268
           ++HQ T+ D+A
Sbjct: 282 DFHQFTTHDVA 292



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.126    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,658,811
Number of extensions: 380139
Number of successful extensions: 1510
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1507
Number of HSP's successfully gapped: 4
Length of query: 318
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 217
Effective length of database: 11,762,187
Effective search space: 2552394579
Effective search space used: 2552394579
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)