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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0228100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.66 (0.0736) R2 : 0.187
β1 : -2.93 (0.506) R2dD : 0.549 R2D : -0.196
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.31 (0.226) R2dE : 0.193 R2E : -0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -7.18 (1.79) R2dD*E : 0.309 R2D*E : -0.395
γ1 : 0.0154 (0.139) R2dN8 : 0.000119 R2N8 : -0.0128
σ : 0.871
deviance : 349.64
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 27.47
memory length : 5822
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
339.84 0.866 3.67 -2.59 0.497 1.02 -0.491 -4.48 -0.191 10 21.63 5827 -- --
349.43 0.871 3.52 -1.47 0.533 1.2 -0.609 -- 0.0659 10.6 -15.72 8372 -- --
340.31 0.859 3.68 -2.74 0.505 1.07 -- -5.04 -0.214 9.67 22.89 5880 -- --
350.32 0.872 3.52 -1.51 0.532 1.27 -- -- 0.0335 10.1 -10.98 8321 -- --
349.64 0.871 3.66 -2.93 -- 1.31 -- -7.18 0.0154 -- 27.47 5822 -- --
375.35 0.908 3.44 -0.819 0.491 -- -0.561 -- 0.405 9.94 -- -- -- --
376.53 0.909 3.44 -0.842 0.497 -- -- -- 0.403 9.71 -- -- -- --
365.99 0.891 3.54 -1.51 -- 1.25 -- -- 0.032 -- -13.7 8735 -- --
391.17 0.921 3.43 -- 0.503 0.42 -- -- 0.427 9.96 -7.869 5824 -- --
391.21 0.924 3.45 -0.846 -- -- -- -- 0.403 -- -- -- -- --
395.19 0.93 3.42 -- 0.499 -- -- -- 0.497 9.83 -- -- -- --
405.23 0.941 3.44 -- -- 0.563 -- -- 0.434 -- -12.12 5860 -- --
410.09 0.945 3.43 -- -- -- -- -- 0.497 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 338.24 wind 1 43200 < th dose independent rect. 23 3
2 338.33 temperature 20 720 > th dose dependent rect. 21 12
3 339.01 wind 1 43200 < th dose dependent rect. 11 18
4 339.39 humidity 90 43200 < th dose independent rect. 14 7
5 339.43 humidity 90 43200 > th dose independent rect. 14 8
6 339.43 humidity 90 43200 > th dose independent rect. 13 10
8 339.48 humidity 90 43200 < th dose independent rect. 18 1
12 339.56 humidity 90 43200 > th dose independent rect. 16 5
18 339.67 humidity 90 43200 < th dose independent rect. 16 5
29 339.80 wind 1 43200 < th dose dependent rect. 24 2
34 339.88 humidity 90 43200 > th dose independent rect. 11 13
38 339.96 temperature 25 4320 > th dose independent rect. 9 1
41 339.99 humidity 90 43200 > th dose independent sin 19 NA
50 340.11 temperature 25 4320 < th dose independent rect. 9 1
60 340.28 temperature 25 4320 < th dose independent rect. 8 3
61 340.31 humidity 90 43200 < th dose independent sin 19 NA
75 340.48 humidity 90 43200 > th dose dependent rect. 13 10
88 340.61 humidity 90 43200 > th dose dependent rect. 11 13
91 340.64 humidity 90 43200 > th dose dependent rect. 16 7
96 340.65 humidity 90 43200 > th dose dependent sin 19 NA
104 340.69 humidity 90 43200 > th dose dependent rect. 8 17
107 340.71 humidity 90 43200 < th dose independent rect. 9 16
133 340.87 temperature 20 4320 > th dose dependent rect. 7 1
136 340.89 wind 3 43200 < th dose independent rect. 11 1
143 340.96 humidity 90 43200 > th dose independent rect. 3 20
165 341.09 wind 3 43200 > th dose independent rect. 11 1
176 341.16 temperature 20 43200 > th dose dependent rect. 7 1
202 341.28 temperature 25 4320 > th dose dependent rect. 12 1
205 341.29 temperature 20 43200 > th dose dependent rect. 16 8
206 341.30 temperature 20 43200 > th dose dependent rect. 6 4
237 341.36 temperature 20 43200 > th dose dependent rect. 13 19
243 341.37 temperature 20 43200 > th dose dependent sin 15 NA
251 341.37 temperature 20 43200 > th dose dependent rect. 5 20
276 341.39 temperature 20 43200 > th dose dependent rect. 19 1
293 341.40 temperature 20 43200 > th dose dependent no NA NA
295 341.40 temperature 20 43200 > th dose dependent rect. 21 1
315 341.40 temperature 20 43200 > th dose dependent rect. 19 23
329 341.41 temperature 20 43200 > th dose dependent rect. 19 21
331 341.41 temperature 20 43200 > th dose dependent rect. 17 22
370 341.42 temperature 20 43200 > th dose dependent rect. 23 23
434 341.46 temperature 20 43200 > th dose dependent sin 4 NA
476 341.47 wind 1 43200 < th dose dependent rect. 8 21
551 341.52 humidity 90 43200 < th dose independent rect. 3 19
608 341.57 wind 5 43200 < th dose dependent rect. 11 1
628 341.59 radiation 1 43200 < th dose independent rect. 5 3
636 341.60 temperature 25 43200 < th dose independent rect. 21 20
642 341.61 radiation 1 43200 > th dose independent rect. 5 3
647 341.61 wind 5 43200 > th dose dependent rect. 15 1
656 341.62 radiation 1 43200 > th dose independent rect. 18 14
662 341.63 wind 1 43200 > th dose independent rect. 24 2
679 341.64 radiation 1 43200 < th dose dependent rect. 5 2
696 341.67 temperature 25 43200 > th dose independent rect. 22 19
716 341.69 temperature 25 43200 > th dose independent rect. 13 12
717 341.69 temperature 25 43200 < th dose independent rect. 13 12
758 341.74 temperature 25 43200 < th dose independent rect. 2 14
801 341.77 temperature 25 43200 < th dose independent rect. 10 20
803 341.77 humidity 90 43200 > th dose dependent sin 0 NA
819 341.78 temperature 25 43200 < th dose independent rect. 6 19
849 341.80 radiation 1 43200 < th dose independent rect. 3 5
875 341.81 temperature 25 43200 < th dose independent sin 3 NA
877 341.81 radiation 1 43200 < th dose independent rect. 21 11
916 341.82 temperature 25 43200 > th dose independent rect. 2 15
923 341.82 temperature 25 43200 > th dose independent rect. 6 19
926 341.82 radiation 1 43200 > th dose independent rect. 13 19
943 341.83 temperature 25 43200 < th dose independent sin 18 NA
960 341.83 radiation 1 43200 < th dose independent rect. 17 15
975 341.83 temperature 20 43200 > th dose dependent rect. 14 1
980 341.84 temperature 25 43200 > th dose independent sin 18 NA