BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0228100 Os04g0228100|AK059410
(318 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G02800.1 | chr4:1250126-1251478 FORWARD LENGTH=334 233 8e-62
AT5G01970.1 | chr5:373014-374651 REVERSE LENGTH=352 119 2e-27
AT1G30050.1 | chr1:10543177-10544418 FORWARD LENGTH=390 118 5e-27
AT2G30530.1 | chr2:13009071-13010867 FORWARD LENGTH=372 104 5e-23
>AT4G02800.1 | chr4:1250126-1251478 FORWARD LENGTH=334
Length = 333
Score = 233 bits (595), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 136/291 (46%), Positives = 181/291 (62%), Gaps = 24/291 (8%)
Query: 15 RFWDRLRTRVDTILEDR-RLVAPPAATCGVESERGKRLREDSLMLVRGLDSVAASLAQLS 73
R W +R RVD +LE+ + P T +ESER KR + DS++L++G DSV+ +L+ LS
Sbjct: 42 RLWSNVRNRVDVLLEENSKNHKPVTNTIAIESERSKRFKNDSMLLLKGFDSVSHTLSLLS 101
Query: 74 DTLTAAQKGVNALATCSSQARXXXXXXXXXXPKAKRRCSLAETVSFDGETPVAGADSGE- 132
L A +GV LA S + + +++ E G+ +D +
Sbjct: 102 SNLDNALQGVRELAKPPSYSEILHSNLKADQIQRQQKEEDEEEEESKGKKRKHESDVEQT 161
Query: 133 ---GSEKEELAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAALARELKNIK 189
+E+E+ + K+ +K+A+N+A+SMA +A +LARELK IK
Sbjct: 162 EDSSNEEEKRPKERKI------------------MKKAKNIAISMAAKANSLARELKTIK 203
Query: 190 SELHFMQERCGLLEEENKRLREGYDNGVPPEEDDLVRLQLEALLAEKSRLAQENANLSRE 249
S+L F+QERCGLLEEENKRLR+G+ GV PEEDDLVRLQLE LLAEK+RLA ENANL RE
Sbjct: 204 SDLSFIQERCGLLEEENKRLRDGFVKGVRPEEDDLVRLQLEVLLAEKARLANENANLVRE 263
Query: 250 NQSLIQLVEYHQLTSQDLAESYEDVMEGMRLDFSSPLGKIDSDEEGERENR 300
NQ L Q+VEYHQ+TSQDL+ SYE V++G LDFSSPL + D DEE E E R
Sbjct: 264 NQCLHQMVEYHQITSQDLSPSYEQVVQGFCLDFSSPLPQYD-DEEEEHETR 313
>AT5G01970.1 | chr5:373014-374651 REVERSE LENGTH=352
Length = 351
Score = 119 bits (298), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 28/259 (10%)
Query: 16 FWDRLRTRVDTILED-----RRLVAPPAATCGVESERGKRLREDSLMLVRGLDSVAASLA 70
W + + +++ED R A + + E K++ D+ L RGLD + +SL
Sbjct: 58 LWGVIAQKAKSVIEDDKSSDRSTTASQSRFSYLSDEGFKKM--DNPKLRRGLDKLTSSLN 115
Query: 71 QLSDTLTAAQKGVNALATCSSQARXXXXXXXXXXPKAKRRCSLAETVSFDGETPVAGADS 130
Q+ DT A + L + + + +RR G
Sbjct: 116 QIGDTFEKAFEDGRTLV----ENKTADIIQETRKLQTRRR----------------GTGG 155
Query: 131 GEGSEKEELAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAALARELKNIKS 190
+ ++ + + ++ + + T LK +R++A++ A +A L RELK +K+
Sbjct: 156 EDENQNQSYGVSSSWKKSPEQPMQLNHIEHETQLKASRDVAMATAAKAKLLLRELKTVKA 215
Query: 191 ELHFMQERCGLLEEENKRLREGY-DNGVPPEEDDLVRLQLEALLAEKSRLAQENANLSRE 249
+L F +ERC LEEENK LRE + + G P ++DL+RLQLE+LLAEK+RLA EN+ +RE
Sbjct: 216 DLAFAKERCAQLEEENKHLRESHREKGSNPADEDLIRLQLESLLAEKARLAHENSVYARE 275
Query: 250 NQSLIQLVEYHQLTSQDLA 268
N+ L ++VEYHQLT QD+
Sbjct: 276 NRFLREIVEYHQLTMQDVV 294
>AT1G30050.1 | chr1:10543177-10544418 FORWARD LENGTH=390
Length = 389
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 87/121 (71%), Gaps = 4/121 (3%)
Query: 160 KSTNLKRARNLAVSMAGRAAALARELKNIKSELHFMQERCGLLEEENKRLREGYDNGVP- 218
+ + LK +R++A++ A +A L RELK +K++L F +ERC LEEENKRLR+ D G
Sbjct: 182 RESQLKASRDVAMATAAKAKLLLRELKTVKADLAFAKERCSQLEEENKRLRDNRDKGNNN 241
Query: 219 PEEDDLVRLQLEALLAEKSRLAQENANLSRENQSLIQLVEYHQLTSQDLA---ESYEDVM 275
P +DDL+RLQLE LLAEK+RLA EN+ +REN+ L ++VEYHQLT QD+ E E+V
Sbjct: 242 PADDDLIRLQLETLLAEKARLAHENSIYARENRFLREIVEYHQLTMQDVVYIDEGIEEVA 301
Query: 276 E 276
E
Sbjct: 302 E 302
>AT2G30530.1 | chr2:13009071-13010867 FORWARD LENGTH=372
Length = 371
Score = 104 bits (260), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 137/277 (49%), Gaps = 56/277 (20%)
Query: 16 FWDRLRTRVDTILED-----------RRLVAPPAATCGVESERGKRLRE-DSLMLVRGLD 63
FW L ++ L++ R + P+AT E G+ R+ ++ L R LD
Sbjct: 108 FWGSLASKAKAFLDEDDPNQLPQSPKRMEQSIPSATTSGTKEAGQTGRKSENPSLQRRLD 167
Query: 64 SVAASLAQLSDTL-TAAQKGVNALATCSSQARXXXXXXXXXXPKAKRRCSLAETVSFDGE 122
++ +SL + T+ T ++G+ A+ ++ K K++ SL
Sbjct: 168 AITSSLNYIGGTIGTVVEEGITAVENRTA------GIIQETRKKIKKKPSLTRN------ 215
Query: 123 TPVAGADSGEGSEKEELAADAKLRQENGGIQATSEVAKSTNLKRARNLAVSMAGRAAALA 182
Q+N IQA E+ LK +R++A++MA +A L
Sbjct: 216 ------------------------QQNPEIQADLEI----QLKASRDVAMAMAAKAKLLL 247
Query: 183 RELKNIKSELHFMQERCGLLEEENKRLREGYDNGVPPEEDDLVRLQLEALLAEKSRLAQE 242
RELK +KS+L F ++RC LEEENK LRE ++DDLVRLQLE LLAEK+RLA E
Sbjct: 248 RELKMVKSDLAFAKQRCAQLEEENKVLRENRSGDSQTDDDDLVRLQLETLLAEKARLAHE 307
Query: 243 NANLSRENQSLIQLVEYHQLTSQDLA---ESYEDVME 276
N+ +REN L +VEYHQLT QD+ E E+V E
Sbjct: 308 NSIYTRENLYLRGVVEYHQLTMQDVVYFDEKTEEVTE 344
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.310 0.126 0.336
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,970,722
Number of extensions: 226649
Number of successful extensions: 849
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 846
Number of HSP's successfully gapped: 4
Length of query: 318
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 219
Effective length of database: 8,392,385
Effective search space: 1837932315
Effective search space used: 1837932315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)