BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0218900 Os04g0218900|AK071049
(334 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0218900 TRAF-like domain containing protein 656 0.0
Os05g0305200 TRAF-like domain containing protein 653 0.0
Os12g0181300 TRAF-like domain containing protein 613 e-176
Os04g0217900 Zinc finger, TRAF-type domain containing protein 374 e-104
Os02g0605500 TRAF-like domain containing protein 267 7e-72
>Os04g0218900 TRAF-like domain containing protein
Length = 334
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/334 (95%), Positives = 319/334 (95%)
Query: 1 MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV 60
MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV
Sbjct: 1 MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV 60
Query: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH 120
DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH
Sbjct: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH 120
Query: 121 VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEER 180
VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEER
Sbjct: 121 VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEER 180
Query: 181 LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHC 240
LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHC
Sbjct: 181 LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHC 240
Query: 241 VTVCPMRPMKCPFGCDSSFPERNLEQHCSEFXXXXXXXXXXXXXXXGFTDEGLKDHALLL 300
VTVCPMRPMKCPFGCDSSFPERNLEQHCSEF GFTDEGLKDHALLL
Sbjct: 241 VTVCPMRPMKCPFGCDSSFPERNLEQHCSEFLQAHLHKLLKAIHKKGFTDEGLKDHALLL 300
Query: 301 EKHDNDGKLAKSRDVRSLTNVVKNLEAKIKDDSS 334
EKHDNDGKLAKSRDVRSLTNVVKNLEAKIKDDSS
Sbjct: 301 EKHDNDGKLAKSRDVRSLTNVVKNLEAKIKDDSS 334
>Os05g0305200 TRAF-like domain containing protein
Length = 334
Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 317/334 (94%), Positives = 318/334 (95%)
Query: 1 MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV 60
MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV
Sbjct: 1 MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV 60
Query: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH 120
DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH
Sbjct: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH 120
Query: 121 VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEER 180
VSGWLMSDSREDKIDDFVQEMEMTRFWPLERRE+IAEVLLKNVDLKTKYHCPEKYENEER
Sbjct: 121 VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREIIAEVLLKNVDLKTKYHCPEKYENEER 180
Query: 181 LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHC 240
LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLR DMDRHC
Sbjct: 181 LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRRDMDRHC 240
Query: 241 VTVCPMRPMKCPFGCDSSFPERNLEQHCSEFXXXXXXXXXXXXXXXGFTDEGLKDHALLL 300
VTVCPMRPMKCPFGCDSSFPERNLEQHCSEF GFTDEGLKDHALLL
Sbjct: 241 VTVCPMRPMKCPFGCDSSFPERNLEQHCSEFLQAHLHKLLKAIHKKGFTDEGLKDHALLL 300
Query: 301 EKHDNDGKLAKSRDVRSLTNVVKNLEAKIKDDSS 334
EKHDNDGKLAKSRDVRSLTNVVKNLEAKIKDDSS
Sbjct: 301 EKHDNDGKLAKSRDVRSLTNVVKNLEAKIKDDSS 334
>Os12g0181300 TRAF-like domain containing protein
Length = 335
Score = 613 bits (1581), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/334 (88%), Positives = 306/334 (91%)
Query: 1 MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV 60
MELPV +PGPVR+EGLLLQCPYCDSEAMHKLAQ LLPGLAAV IDCTTGDLFRKPSVVAV
Sbjct: 1 MELPVTEPGPVRSEGLLLQCPYCDSEAMHKLAQLLLPGLAAVSIDCTTGDLFRKPSVVAV 60
Query: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH 120
DMRKEMVDYVTQRSETFISDSLIESEASQD+E EMPEDPFE+VSIFMDDFSSTKRNIIGH
Sbjct: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDEEKEMPEDPFEVVSIFMDDFSSTKRNIIGH 120
Query: 121 VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEER 180
VSGWLMSD+REDKIDDFVQEMEMTRFWPLERRE IAEVLLKNVDLKTKYHCPEKYENE+R
Sbjct: 121 VSGWLMSDNREDKIDDFVQEMEMTRFWPLERREAIAEVLLKNVDLKTKYHCPEKYENEQR 180
Query: 181 LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHC 240
LADHKAQCSFRPVTCPNDGCRAKVSVRCM DHDSACLFKILTCEQ+CEKRL+R DMDRHC
Sbjct: 181 LADHKAQCSFRPVTCPNDGCRAKVSVRCMTDHDSACLFKILTCEQSCEKRLMRRDMDRHC 240
Query: 241 VTVCPMRPMKCPFGCDSSFPERNLEQHCSEFXXXXXXXXXXXXXXXGFTDEGLKDHALLL 300
VTVCPMRPMKCPFGCDSSFPERNLEQHCSEF GFTDEG KDHALLL
Sbjct: 241 VTVCPMRPMKCPFGCDSSFPERNLEQHCSEFLQPHLLKVLKAIHKKGFTDEGFKDHALLL 300
Query: 301 EKHDNDGKLAKSRDVRSLTNVVKNLEAKIKDDSS 334
EK D DGKL KSR+VRSLTNVVKNLEAK+K+ S
Sbjct: 301 EKQDIDGKLGKSREVRSLTNVVKNLEAKMKNGGS 334
>Os04g0217900 Zinc finger, TRAF-type domain containing protein
Length = 266
Score = 374 bits (961), Expect = e-104, Method: Compositional matrix adjust.
Identities = 205/314 (65%), Positives = 217/314 (69%), Gaps = 57/314 (18%)
Query: 1 MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV 60
MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV
Sbjct: 1 MELPVADPGPVRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAV 60
Query: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGH 120
DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMP DPFEIVSIFMDDFSSTKRNIIGH
Sbjct: 61 DMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPVDPFEIVSIFMDDFSSTKRNIIGH 120
Query: 121 VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEER 180
VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNV+ PE E+R
Sbjct: 121 VSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVE-------PENQNCEKR 173
Query: 181 LADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHC 240
L R + C+ + C + + C C+ ++++HC
Sbjct: 174 L------------------LRRDMDRHCV----TVCPMRPMKCPFGCDSSFPERNLEQHC 211
Query: 241 VTVCPMRPMKCPFGCDSSFPERNLEQHCSEFXXXXXXXXXXXXXXXGFTDEGLKDHALLL 300
SEF GFTDEGLKDHALLL
Sbjct: 212 ----------------------------SEFLQAHLHKLLKVIHKKGFTDEGLKDHALLL 243
Query: 301 EKHDNDGKLAKSRD 314
EKHDNDGKLAKSRD
Sbjct: 244 EKHDNDGKLAKSRD 257
>Os02g0605500 TRAF-like domain containing protein
Length = 355
Score = 267 bits (683), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 198/323 (61%), Gaps = 3/323 (0%)
Query: 11 VRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAVDMRKEMVDYV 70
V +GL QC CDS+ +H +A+ LL GLA +D TTGD+F+ PS VAV M+ E+ +Y+
Sbjct: 8 VGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMKSELAEYL 67
Query: 71 TQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGHVSGWLMSDSR 130
Q S T + +++ E +Q + P E +S +D F ++KRN++ HVSG+L S++R
Sbjct: 68 IQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSGFLSSETR 127
Query: 131 EDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEERLADHKAQCSF 190
+KI DF+Q++EM FW + RE A +LK++D+K HCPE+++ +++LA+H+ C F
Sbjct: 128 LNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAEHRNLCRF 187
Query: 191 RPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHCVTVCPMRPMK 250
R V C NDGC A S ++ HDS C FK+L CEQ CE+ ++R +MDRHC +VCPM+ +
Sbjct: 188 RIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASVCPMKLIN 247
Query: 251 CPF---GCDSSFPERNLEQHCSEFXXXXXXXXXXXXXXXGFTDEGLKDHALLLEKHDNDG 307
CPF GC+S+FP+ L++HCSE + LLEK +
Sbjct: 248 CPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLLEKAQSLN 307
Query: 308 KLAKSRDVRSLTNVVKNLEAKIK 330
+L+ + D R+LT K EAKIK
Sbjct: 308 ELSGALDNRTLTLTAKEQEAKIK 330
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,943,062
Number of extensions: 432553
Number of successful extensions: 1014
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 999
Number of HSP's successfully gapped: 6
Length of query: 334
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 233
Effective length of database: 11,762,187
Effective search space: 2740589571
Effective search space used: 2740589571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)