Os05g0305200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os05g0305200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35 | 0.278 | 9.05 | 0.452 | 0.178 | -1.13 | 0.563 | 2.86 | 0.431 | 3.91 | 19 | 228 | -- | -- |
| 40.06 | 0.295 | 9.1 | -0.0316 | 0.194 | -1.03 | -0.165 | -- | 0.288 | 4.34 | 17.87 | 224 | -- | -- |
| 35.68 | 0.278 | 9.06 | 0.376 | 0.179 | -1.1 | -- | 2.46 | 0.41 | 3.55 | 18.87 | 235 | -- | -- |
| 39.83 | 0.294 | 9.11 | -0.0512 | 0.195 | -1.21 | -- | -- | 0.286 | 3.75 | 14.9 | 220 | -- | -- |
| 36.8 | 0.283 | 9.05 | 0.393 | -- | -1.28 | -- | 2.36 | 0.433 | -- | 19 | 208 | -- | -- |
| 55.68 | 0.35 | 9.14 | -0.316 | 0.55 | -- | 0.000647 | -- | 0.111 | 4.09 | -- | -- | -- | -- |
| 55.68 | 0.349 | 9.14 | -0.316 | 0.55 | -- | -- | -- | 0.111 | 4.09 | -- | -- | -- | -- |
| 41.25 | 0.299 | 9.1 | -0.0129 | -- | -1.33 | -- | -- | 0.319 | -- | 16.26 | 204 | -- | -- |
| 39.89 | 0.294 | 9.11 | -- | 0.187 | -1.25 | -- | -- | 0.294 | 3.72 | 14.8 | 220 | -- | -- |
| 72.12 | 0.397 | 9.15 | -0.294 | -- | -- | -- | -- | 0.125 | -- | -- | -- | -- | -- |
| 58.31 | 0.357 | 9.14 | -- | 0.544 | -- | -- | -- | 0.146 | 4.1 | -- | -- | -- | -- |
| 41.25 | 0.299 | 9.1 | -- | -- | -1.35 | -- | -- | 0.318 | -- | 16.03 | 204 | -- | -- |
| 74.4 | 0.403 | 9.14 | -- | -- | -- | -- | -- | 0.158 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 35.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 3 | 35.70 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 4 | 35.85 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 8 | 35.94 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 9 | 35.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 23 |
| 10 | 35.96 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 28 | 36.46 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 49 | 36.84 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 50 | 36.84 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 52 | 36.89 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 76 | 37.10 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 15 |
| 82 | 37.14 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 9 |
| 96 | 37.18 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 103 | 37.19 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 108 | 37.20 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 113 | 37.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 15 |
| 123 | 37.22 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 124 | 37.22 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 5 |
| 159 | 37.26 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 4 |
| 219 | 37.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 10 | NA |
| 269 | 37.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 357 | 37.43 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 370 | 37.44 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 423 | 37.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 494 | 37.55 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 505 | 37.55 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 547 | 37.58 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 635 | 37.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 670 | 37.67 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 771 | 37.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 780 | 37.78 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 956 | 37.92 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |