Os04g0218900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os04g0218900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.31 | 0.236 | 9.13 | 0.893 | 0.444 | -0.559 | -0.507 | 5.92 | 0.159 | 6.44 | 29.93 | 2657 | -- | -- |
| 27.92 | 0.246 | 9.26 | -0.271 | 0.479 | 0.165 | -0.352 | -- | 0.121 | 5.98 | 32.6 | 5041 | -- | -- |
| 25.75 | 0.236 | 9.12 | 0.928 | 0.439 | -0.565 | -- | 5.89 | 0.192 | 6.39 | 29.83 | 2669 | -- | -- |
| 28.21 | 0.247 | 9.25 | -0.259 | 0.476 | 0.15 | -- | -- | 0.109 | 6.26 | 32.53 | 4317 | -- | -- |
| 35.74 | 0.278 | 9.13 | 0.989 | -- | -0.584 | -- | 6.24 | 0.202 | -- | 29.89 | 2668 | -- | -- |
| 28.7 | 0.251 | 9.27 | -0.229 | 0.468 | -- | -0.491 | -- | 0.0671 | 6.44 | -- | -- | -- | -- |
| 29.3 | 0.253 | 9.27 | -0.236 | 0.466 | -- | -- | -- | 0.0685 | 6.38 | -- | -- | -- | -- |
| 39.05 | 0.291 | 9.27 | -0.291 | -- | 0.172 | -- | -- | 0.113 | -- | 32.5 | 5626 | -- | -- |
| 30.01 | 0.255 | 9.26 | -- | 0.462 | 0.152 | -- | -- | 0.122 | 6.5 | 32.4 | 4035 | -- | -- |
| 40.59 | 0.298 | 9.28 | -0.224 | -- | -- | -- | -- | 0.0785 | -- | -- | -- | -- | -- |
| 30.76 | 0.259 | 9.26 | -- | 0.463 | -- | -- | -- | 0.0948 | 6.4 | -- | -- | -- | -- |
| 40.88 | 0.298 | 9.27 | -- | -- | 0.132 | -- | -- | 0.128 | -- | 30.71 | 5733 | -- | -- |
| 41.91 | 0.302 | 9.27 | -- | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 10 | 24.53 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 34 | 24.64 | temperature | 25 | 270 | > th | dose independent | rect. | 17 | 15 |
| 39 | 24.69 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 5 |
| 49 | 24.78 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 3 |
| 67 | 24.98 | temperature | 25 | 270 | > th | dose independent | sin | 13 | NA |
| 128 | 25.23 | temperature | 25 | 720 | > th | dose independent | rect. | 16 | 5 |
| 153 | 25.32 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 11 |
| 166 | 25.36 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 14 |
| 170 | 25.37 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 11 |
| 184 | 25.41 | temperature | 30 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 199 | 25.41 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 228 | 25.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 8 |
| 239 | 25.45 | temperature | 25 | 4320 | > th | dose dependent | sin | 12 | NA |
| 280 | 25.51 | temperature | 25 | 720 | > th | dose independent | rect. | 17 | 2 |
| 318 | 25.55 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 319 | 25.55 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 14 |
| 330 | 25.57 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 348 | 25.59 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 11 |
| 375 | 25.62 | temperature | 30 | 1440 | > th | dose independent | sin | 5 | NA |
| 378 | 25.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 11 |
| 394 | 25.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 17 | 1 |
| 418 | 25.66 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 461 | 25.69 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 471 | 25.70 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 519 | 25.73 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 9 |
| 532 | 25.74 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 8 |
| 565 | 25.77 | temperature | 25 | 90 | > th | dose independent | rect. | 20 | 7 |
| 568 | 25.77 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 10 |
| 569 | 25.77 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 17 | 10 |
| 590 | 25.78 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 9 |
| 604 | 25.78 | temperature | 25 | 720 | < th | dose independent | rect. | 16 | 15 |
| 619 | 25.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 625 | 25.79 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 11 |
| 630 | 25.79 | temperature | 30 | 1440 | < th | dose independent | rect. | 24 | 15 |
| 663 | 25.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 17 |
| 668 | 25.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 735 | 25.84 | temperature | 30 | 1440 | < th | dose independent | sin | 5 | NA |
| 753 | 25.85 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 784 | 25.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 6 |
| 795 | 25.87 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |
| 903 | 25.88 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 945 | 25.89 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 954 | 25.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 1 | 1 |
| 978 | 25.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 17 |
| 981 | 25.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 19 |