BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0218900 Os04g0218900|AK071049
         (334 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G11950.1  | chr3:3783273-3785098 REVERSE LENGTH=573            292   2e-79

>AT3G11950.1 | chr3:3783273-3785098 REVERSE LENGTH=573
          Length = 572

 Score =  292 bits (747), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 144/335 (42%), Positives = 211/335 (62%), Gaps = 12/335 (3%)

Query: 1   MELPVADPGPV---RAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSV 57
           M+ PV+D   +   +  G    C   D++ +HK+AQ  LPGLA  C+D TTGD+FR P  
Sbjct: 1   MDPPVSDLESIEDQKEGGPSFHCDLYDTQVVHKIAQVFLPGLATACVDNTTGDIFRSPGS 60

Query: 58  VAVDMRKEMVDYVTQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNI 117
           VA D+RKEM++Y+T+RSETF+++ ++    S   E E   DPF+I+S F+DDF+++KRN+
Sbjct: 61  VAADIRKEMIEYLTRRSETFVAEHIVLQGGS---EIEASHDPFDIISDFIDDFATSKRNL 117

Query: 118 IGHVSGWLMSDSREDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYEN 177
              VSGW++S+ RED IDDF QEME++ FW  + RE IA+ LLKNVD K+  HC  K++ 
Sbjct: 118 FSRVSGWMLSERREDNIDDFAQEMEISGFWLTDHREGIAQTLLKNVDFKSSAHCEMKFQT 177

Query: 178 EERLADHKAQCSFRPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMD 237
           E  LA+H   C +R + C N+GC A      M++HDS C FKI+ CEQNC + ++R DMD
Sbjct: 178 EGELAEHAMNCGYRTMNCENEGCTAVFCANQMENHDSVCPFKIIPCEQNCSESIMRRDMD 237

Query: 238 RHCVTVCPMRPMKCPF---GCDSSFPERNLEQHCSEFXXXXXXXXXXXXXXXGFTDEGLK 294
           RHC+TVCPM+ + CPF   GC S   +  ++QH  +                   D+ LK
Sbjct: 238 RHCITVCPMKLVNCPFHSVGCLSDVHQCEVQQHHLDNVSSHLMYILRSIYKEASLDD-LK 296

Query: 295 DHALLLEKHDNDGKLAKSRDVRSLTNVVKNLEAKI 329
             A  +++     +L+++R+ RSLTN+VK ++ K+
Sbjct: 297 PRAEQIQQLST--RLSEARNARSLTNLVKEIDGKL 329



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,203,708
Number of extensions: 295574
Number of successful extensions: 787
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 784
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 235
Effective length of database: 8,392,385
Effective search space: 1972210475
Effective search space used: 1972210475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)