Os02g0605500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os02g0605500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.18 | 0.24 | 9.36 | 0.0929 | 0.185 | -0.367 | -0.237 | -0.912 | -0.0381 | 6.07 | 1007 | 9315 | -- | -- |
| 26.72 | 0.241 | 9.35 | 0.173 | 0.185 | -0.484 | -0.241 | -- | -0.0516 | 6.07 | 1006 | 10110 | -- | -- |
| 26.31 | 0.239 | 9.36 | 0.0921 | 0.185 | -0.363 | -- | -0.917 | -0.037 | 6.18 | 1007 | 9514 | -- | -- |
| 26.85 | 0.241 | 9.35 | 0.17 | 0.183 | -0.489 | -- | -- | -0.0492 | 6.27 | 1006 | 10091 | -- | -- |
| 28.07 | 0.247 | 9.36 | 0.0985 | -- | -0.363 | -- | -0.919 | -0.0329 | -- | 1007 | 9394 | -- | -- |
| 31.16 | 0.262 | 9.33 | 0.104 | 0.186 | -- | -0.237 | -- | 0.0166 | 6.07 | -- | -- | -- | -- |
| 31.3 | 0.262 | 9.33 | 0.102 | 0.185 | -- | -- | -- | 0.0176 | 6.21 | -- | -- | -- | -- |
| 28.59 | 0.249 | 9.35 | 0.178 | -- | -0.488 | -- | -- | -0.0454 | -- | 1006 | 10461 | -- | -- |
| 27.61 | 0.245 | 9.35 | -- | 0.186 | -0.456 | -- | -- | -0.0625 | 6.23 | 1006 | 10013 | -- | -- |
| 33.07 | 0.269 | 9.34 | 0.107 | -- | -- | -- | -- | 0.0216 | -- | -- | -- | -- | -- |
| 31.57 | 0.263 | 9.34 | -- | 0.186 | -- | -- | -- | 0.00618 | 6.18 | -- | -- | -- | -- |
| 29.4 | 0.253 | 9.35 | -- | -- | -0.455 | -- | -- | -0.0593 | -- | 1006 | 10189 | -- | -- |
| 33.37 | 0.27 | 9.34 | -- | -- | -- | -- | -- | 0.00972 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.46 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 2 | 23.97 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 3 | 24.15 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 5 | 24.20 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 6 | 24.20 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 8 | 24.26 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 7 |
| 9 | 24.27 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 10 | 24.30 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 5 |
| 11 | 24.31 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 5 |
| 14 | 24.42 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 15 | 24.51 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 21 | 24.69 | wind | 3.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 26 | 24.84 | wind | 7.0 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 31 | 24.91 | wind | 7.0 | 4320 | < th | dose independent | rect. | 20 | 2 |
| 50 | 25.06 | humidity | 80.0 | 1440 | > th | dose dependent | rect. | 2 | 9 |
| 53 | 25.08 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 56 | 25.10 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 4 |
| 73 | 25.22 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 76 | 25.23 | wind | 9.0 | 4320 | > th | dose independent | rect. | 18 | 3 |
| 88 | 25.27 | wind | 9.0 | 4320 | < th | dose independent | rect. | 18 | 3 |
| 112 | 25.35 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 124 | 25.39 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 8 |
| 133 | 25.42 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 3 | 1 |
| 141 | 25.44 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 207 | 25.50 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 4 |
| 214 | 25.51 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 6 |
| 220 | 25.52 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 248 | 25.57 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 254 | 25.57 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 10 |
| 260 | 25.58 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 264 | 25.58 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 10 | 8 |
| 274 | 25.59 | atmosphere | 995.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 278 | 25.59 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 294 | 25.61 | atmosphere | 1005.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 299 | 25.61 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 5 |
| 307 | 25.61 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 308 | 25.61 | atmosphere | 995.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 316 | 25.62 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 15 | 3 |
| 369 | 25.64 | atmosphere | 1005.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 400 | 25.65 | atmosphere | 995.0 | 14400 | > th | dose independent | rect. | 12 | 2 |
| 407 | 25.65 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 432 | 25.67 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 437 | 25.68 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 443 | 25.68 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 456 | 25.69 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 23 | 15 |
| 604 | 25.75 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 19 |
| 619 | 25.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 17 |
| 823 | 25.85 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 840 | 25.87 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 852 | 25.87 | humidity | 80.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 862 | 25.88 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 866 | 25.89 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 889 | 25.90 | atmosphere | 1005.0 | 14400 | > th | dose independent | no | NA | NA |
| 890 | 25.90 | wind | 9.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 916 | 25.91 | atmosphere | 1005.0 | 14400 | < th | dose independent | no | NA | NA |
| 952 | 25.92 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 1 | 23 |
| 953 | 25.92 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 956 | 25.92 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 5 | 23 |