BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0605500 Os02g0605500|AK067496
(355 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0605500 TRAF-like domain containing protein 733 0.0
Os04g0218900 TRAF-like domain containing protein 281 6e-76
Os12g0181300 TRAF-like domain containing protein 281 6e-76
Os05g0305200 TRAF-like domain containing protein 280 8e-76
Os04g0217900 Zinc finger, TRAF-type domain containing protein 146 2e-35
>Os02g0605500 TRAF-like domain containing protein
Length = 355
Score = 733 bits (1893), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MENLECTVGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMK 60
MENLECTVGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMK
Sbjct: 1 MENLECTVGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMK 60
Query: 61 SELAEYLIQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSG 120
SELAEYLIQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSG
Sbjct: 61 SELAEYLIQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSG 120
Query: 121 FLSSETRLNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAE 180
FLSSETRLNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAE
Sbjct: 121 FLSSETRLNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAE 180
Query: 181 HRNLCRFRIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASV 240
HRNLCRFRIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASV
Sbjct: 181 HRNLCRFRIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASV 240
Query: 241 CPMKLINCPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLL 300
CPMKLINCPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLL
Sbjct: 241 CPMKLINCPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLL 300
Query: 301 EKAQSLNELSGALDNRTLTLTAKEQEAKIKKLEQDLKVQETKLKKLESEFKSGKV 355
EKAQSLNELSGALDNRTLTLTAKEQEAKIKKLEQDLKVQETKLKKLESEFKSGKV
Sbjct: 301 EKAQSLNELSGALDNRTLTLTAKEQEAKIKKLEQDLKVQETKLKKLESEFKSGKV 355
>Os04g0218900 TRAF-like domain containing protein
Length = 334
Score = 281 bits (719), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 206/323 (63%), Gaps = 3/323 (0%)
Query: 8 VGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMKSELAEYL 67
V +GL QC CDS+ +H +A+ LL GLA +D TTGD+F+ PS VAV M+ E+ +Y+
Sbjct: 11 VRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAVDMRKEMVDYV 70
Query: 68 IQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSGFLSSETR 127
Q S T + +++ E +Q + P E +S +D F ++KRN++ HVSG+L S++R
Sbjct: 71 TQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGHVSGWLMSDSR 130
Query: 128 LNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAEHRNLCRF 187
+KI DF+Q++EM FW + RE A +LK++D+K HCPE+++ +++LA+H+ C F
Sbjct: 131 EDKIDDFVQEMEMTRFWPLERREVIAEVLLKNVDLKTKYHCPEKYENEERLADHKAQCSF 190
Query: 188 RIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASVCPMKLIN 247
R V C NDGC A S ++ HDS C FK+L CEQ CE+ ++R +MDRHC +VCPM+ +
Sbjct: 191 RPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRHDMDRHCVTVCPMRPMK 250
Query: 248 CPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLLEKAQSLN 307
CPF GC+S+FP+ L++HCSE LQ HL +L+ + + LLEK +
Sbjct: 251 CPF---GCDSSFPERNLEQHCSEFLQAHLHKLLKAIHKKGFTDEGLKDHALLLEKHDNDG 307
Query: 308 ELSGALDNRTLTLTAKEQEAKIK 330
+L+ + D R+LT K EAKIK
Sbjct: 308 KLAKSRDVRSLTNVVKNLEAKIK 330
>Os12g0181300 TRAF-like domain containing protein
Length = 335
Score = 281 bits (718), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 204/323 (63%), Gaps = 3/323 (0%)
Query: 8 VGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMKSELAEYL 67
V +GL QC CDS+ +H +A++LL GLA S+D TTGD+F+ PS VAV M+ E+ +Y+
Sbjct: 11 VRSEGLLLQCPYCDSEAMHKLAQLLLPGLAAVSIDCTTGDLFRKPSVVAVDMRKEMVDYV 70
Query: 68 IQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSGFLSSETR 127
Q S T + +++ E ++ + P E +S +D F ++KRN++ HVSG+L S+ R
Sbjct: 71 TQRSETFISDSLIESEASQDEEKEMPEDPFEVVSIFMDDFSSTKRNIIGHVSGWLMSDNR 130
Query: 128 LNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAEHRNLCRF 187
+KI DF+Q++EM FW + REA A +LK++D+K HCPE+++ + +LA+H+ C F
Sbjct: 131 EDKIDDFVQEMEMTRFWPLERREAIAEVLLKNVDLKTKYHCPEKYENEQRLADHKAQCSF 190
Query: 188 RIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASVCPMKLIN 247
R V C NDGC A S + HDS C FK+L CEQ CE+ +MR +MDRHC +VCPM+ +
Sbjct: 191 RPVTCPNDGCRAKVSVRCMTDHDSACLFKILTCEQSCEKRLMRRDMDRHCVTVCPMRPMK 250
Query: 248 CPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLLEKAQSLN 307
CPF GC+S+FP+ L++HCSE LQ HL+ +L+ + LLEK
Sbjct: 251 CPF---GCDSSFPERNLEQHCSEFLQPHLLKVLKAIHKKGFTDEGFKDHALLLEKQDIDG 307
Query: 308 ELSGALDNRTLTLTAKEQEAKIK 330
+L + + R+LT K EAK+K
Sbjct: 308 KLGKSREVRSLTNVVKNLEAKMK 330
>Os05g0305200 TRAF-like domain containing protein
Length = 334
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 138/323 (42%), Positives = 206/323 (63%), Gaps = 3/323 (0%)
Query: 8 VGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMKSELAEYL 67
V +GL QC CDS+ +H +A+ LL GLA +D TTGD+F+ PS VAV M+ E+ +Y+
Sbjct: 11 VRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAVDMRKEMVDYV 70
Query: 68 IQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSGFLSSETR 127
Q S T + +++ E +Q + P E +S +D F ++KRN++ HVSG+L S++R
Sbjct: 71 TQRSETFISDSLIESEASQDQENEMPEDPFEIVSIFMDDFSSTKRNIIGHVSGWLMSDSR 130
Query: 128 LNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAEHRNLCRF 187
+KI DF+Q++EM FW + RE A +LK++D+K HCPE+++ +++LA+H+ C F
Sbjct: 131 EDKIDDFVQEMEMTRFWPLERREIIAEVLLKNVDLKTKYHCPEKYENEERLADHKAQCSF 190
Query: 188 RIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASVCPMKLIN 247
R V C NDGC A S ++ HDS C FK+L CEQ CE+ ++R +MDRHC +VCPM+ +
Sbjct: 191 RPVTCPNDGCRAKVSVRCMQDHDSACLFKILTCEQNCEKRLLRRDMDRHCVTVCPMRPMK 250
Query: 248 CPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLLEKAQSLN 307
CPF GC+S+FP+ L++HCSE LQ HL +L+ + + LLEK +
Sbjct: 251 CPF---GCDSSFPERNLEQHCSEFLQAHLHKLLKAIHKKGFTDEGLKDHALLLEKHDNDG 307
Query: 308 ELSGALDNRTLTLTAKEQEAKIK 330
+L+ + D R+LT K EAKIK
Sbjct: 308 KLAKSRDVRSLTNVVKNLEAKIK 330
>Os04g0217900 Zinc finger, TRAF-type domain containing protein
Length = 266
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 149/308 (48%), Gaps = 60/308 (19%)
Query: 8 VGKDGLNFQCNLCDSDVVHSMAEILLRGLATASVDSTTGDIFKSPSSVAVGMKSELAEYL 67
V +GL QC CDS+ +H +A+ LL GLA +D TTGD+F+ PS VAV M+ E+ +Y+
Sbjct: 11 VRAEGLLLQCPYCDSEAMHKLAQFLLPGLAAVCIDCTTGDLFRKPSVVAVDMRKEMVDYV 70
Query: 68 IQGSMTLVREAVDGGEDHSEQLIKASTMPTEFLSDLIDGFVASKRNLLSHVSGFLSSETR 127
Q S T + +++ E +Q + P E +S +D F ++KRN++ HVSG+L S++
Sbjct: 71 TQRSETFISDSLIESEASQDQENEMPVDPFEIVSIFMDDFSSTKRNIIGHVSGWLMSDS- 129
Query: 128 LNKIKDFIQKLEMENFWAPDVREATAGTILKSIDMKCIIHCPERFDTQDKLAEHRNLCRF 187
R D D + + RF
Sbjct: 130 -------------------------------------------REDKIDDFVQEMEMTRF 146
Query: 188 RIVNCKNDGCLASFSANHIEKHDSVCPFKVLPCEQLCEQHVMRCEMDRHCASVCPMKLIN 247
+ + +A ++E P Q CE+ ++R +MDRHC +VCPM+ +
Sbjct: 147 WPLERRE--VIAEVLLKNVE-----------PENQNCEKRLLRRDMDRHCVTVCPMRPMK 193
Query: 248 CPFYQVGCESAFPQCVLDKHCSERLQIHLMYILELTTRHDAFVNDMNQRLHLLEKAQSLN 307
CPF GC+S+FP+ L++HCSE LQ HL +L++ + + LLEK +
Sbjct: 194 CPF---GCDSSFPERNLEQHCSEFLQAHLHKLLKVIHKKGFTDEGLKDHALLLEKHDNDG 250
Query: 308 ELSGALDN 315
+L+ + D+
Sbjct: 251 KLAKSRDH 258
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.133 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,970,672
Number of extensions: 423409
Number of successful extensions: 1166
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 6
Length of query: 355
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 253
Effective length of database: 11,709,973
Effective search space: 2962623169
Effective search space used: 2962623169
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)