BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0118100 Os04g0118100|AK106028
(445 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0118100 Similar to Chloroplast Toc64-2 805 0.0
Os04g0117800 Amidase family protein 665 0.0
Os03g0707900 Similar to Toc64 306 2e-83
Os02g0754500 Amidase family protein 294 1e-79
>Os04g0118100 Similar to Chloroplast Toc64-2
Length = 445
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/445 (90%), Positives = 401/445 (90%)
Query: 1 RERQRELELDMAMAGGGRGDYGAFMERFVXXXXXXXXXXXHGLTFAIKDIFDIAGRVTGF 60
RERQRELELDMAMAGGGRGDYGAFMERFV HGLTFAIKDIFDIAGRVTGF
Sbjct: 1 RERQRELELDMAMAGGGRGDYGAFMERFVLPPPPSQQLPLHGLTFAIKDIFDIAGRVTGF 60
Query: 61 GNPDWARTHAPAAATSPVVXXXXXXXXXXXXXXIMDEMAYSINGENTHYGTPTNPCXXXX 120
GNPDWARTHAPAAATSPVV IMDEMAYSINGENTHYGTPTNPC
Sbjct: 61 GNPDWARTHAPAAATSPVVLAALAAGATSLGTTIMDEMAYSINGENTHYGTPTNPCAPGR 120
Query: 121 XXXXXXXXXXXXXXXNLVDFSLGTDTGGSVRVPAAYCGIFGLRPSHGLVSAENVIPMAQM 180
NLVDFSLGTDTGGSVRVPAAYCGIFGLRPSHGLVSAENVIPMAQM
Sbjct: 121 VPGGSSSGSAVAVAANLVDFSLGTDTGGSVRVPAAYCGIFGLRPSHGLVSAENVIPMAQM 180
Query: 181 FDTVGWFSRDLSTLSRVTKVLLPLPDDIVKQPTQVTIPMDCFQILGSLDDRTYQIINASV 240
FDTVGWFSRDLSTLSRVTKVLLPLPDDIVKQPTQVTIPMDCFQILGSLDDRTYQIINASV
Sbjct: 181 FDTVGWFSRDLSTLSRVTKVLLPLPDDIVKQPTQVTIPMDCFQILGSLDDRTYQIINASV 240
Query: 241 AKRFDSQILDNRNLGDFISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKA 300
AKRFDSQILDNRNLGDFISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKA
Sbjct: 241 AKRFDSQILDNRNLGDFISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKA 300
Query: 301 NHAEWVNTVKPNLGPGLRERILEAIASGDNESLEDFQAIRAEFKSALAALLKDHGILAIP 360
NHAEWVNTVKPNLGPGLRERILEAIASGDNESLEDFQAIRAEFKSALAALLKDHGILAIP
Sbjct: 301 NHAEWVNTVKPNLGPGLRERILEAIASGDNESLEDFQAIRAEFKSALAALLKDHGILAIP 360
Query: 361 TVPGPPPKVGMEAAPLENFRARAFSLLSIAGLSGFCQVSIPLGMRNGLPVSVSLVARHGA 420
TVPGPPPKVGMEAAPLENFRARAFSLLSIAGLSGFCQVSIPLGMRNGLPVSVSLVARHGA
Sbjct: 361 TVPGPPPKVGMEAAPLENFRARAFSLLSIAGLSGFCQVSIPLGMRNGLPVSVSLVARHGA 420
Query: 421 DHFLLNVVEELYQTLIDEATKTWSS 445
DHFLLNVVEELYQTLIDEATKTWSS
Sbjct: 421 DHFLLNVVEELYQTLIDEATKTWSS 445
>Os04g0117800 Amidase family protein
Length = 434
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/431 (77%), Positives = 353/431 (81%), Gaps = 5/431 (1%)
Query: 20 DYGAFMERFVXXXXXXXXXXX---HGLTFAIKDIFDIAGRVTGFGNPDWARTHAPAAATS 76
D+GAFMERFV HGLTFAIKDIFDIAGRVTGFGNPDWARTHAPAAATS
Sbjct: 4 DFGAFMERFVLPPPPPPSSQQLPLHGLTFAIKDIFDIAGRVTGFGNPDWARTHAPAAATS 63
Query: 77 PVVXXXXXXXXXXXXXXIMDEMAYSINGENTHYGTPTNPCXXXXXXXXXXXXXXXXXXXN 136
PVV IMDEMAYSI GEN HYGTP NPC N
Sbjct: 64 PVVLAALAAGATSLGTTIMDEMAYSIYGENAHYGTPANPCAPGRVPGGSSSGSAVAVAAN 123
Query: 137 LVDFSLGTDTGGSVRVPAAYCGIFGLRPSHGLVSAENVIPMAQMFDTVGWFSRDLSTLSR 196
LVDFSLGTDTGGSVRVPAAYCGIFGLR SHGLVSA+NVIPMAQMFDTVGWF+RDLSTLSR
Sbjct: 124 LVDFSLGTDTGGSVRVPAAYCGIFGLRTSHGLVSAQNVIPMAQMFDTVGWFARDLSTLSR 183
Query: 197 VTKVLLPLPDDIVKQPTQVTIPMDCFQILGSLDDRTYQIINASVAKRFDSQILDNRNLGD 256
VTKVLLPLPDD VK PT VTIPMDCFQILGS DD TYQI+NASVAK+F S +DN NLGD
Sbjct: 184 VTKVLLPLPDDTVKHPTHVTIPMDCFQILGSPDDHTYQIVNASVAKKFGSHAIDNANLGD 243
Query: 257 FISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKANHAEWVNTVKPNLGPG 316
F+SDNVPSIGKFI DFSESELPSVPALSVISHVM L RSQFKANHAEWVN+VKPNLGPG
Sbjct: 244 FVSDNVPSIGKFIADFSESELPSVPALSVISHVMFSLLRSQFKANHAEWVNSVKPNLGPG 303
Query: 317 LRERILEAIASGDNESLEDFQAIRAEFKSALAALLKDHGILAIPTVPGPPPKVGM--EAA 374
LRE I A+ASGD+E LE+F A+RAEFKSALAALLKDHGILAIPTVPGPPP VG+ +AA
Sbjct: 304 LRENIHGAVASGDDEPLEEFLAVRAEFKSALAALLKDHGILAIPTVPGPPPMVGIQAQAA 363
Query: 375 PLENFRARAFSLLSIAGLSGFCQVSIPLGMRNGLPVSVSLVARHGADHFLLNVVEELYQT 434
PL+N++ARAFSLL IA +SGFCQVSIPLG RNGLPVSVSLVARHGADHFLLNV EELYQT
Sbjct: 364 PLDNYQARAFSLLDIAVVSGFCQVSIPLGKRNGLPVSVSLVARHGADHFLLNVAEELYQT 423
Query: 435 LIDEATKTWSS 445
LIDEA K W+S
Sbjct: 424 LIDEAAKAWAS 434
>Os03g0707900 Similar to Toc64
Length = 586
Score = 306 bits (784), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/428 (39%), Positives = 235/428 (54%), Gaps = 14/428 (3%)
Query: 17 GRGDYGAFMERF--VXXXXXXXXXXXH---GLTFAIKDIFDIAGRVTGFGNPDWARTHAP 71
R D GAF+ R + H GL FAI D F + G +T FG+ +WA+TH
Sbjct: 31 ARPDNGAFIARLELLPPPQPPPPQARHPLTGLCFAIADAFHVTGYITSFGSLEWAKTHDA 90
Query: 72 AAATSPVVXXXXXXXXXXXXXXIMDEMAYSINGENTHYGTPTNPCXXXXXXXXXXXXXXX 131
A TS VV ++DEMA+SI+GEN H+GTPTNP
Sbjct: 91 ATQTSLVVSSLVDGGAMCVGKTVIDEMAFSIHGENKHFGTPTNPAAPDRVPGGCSSGSAV 150
Query: 132 XXXXNLVDFSLGTDTGGSVRVPAAYCGIFGLRPSHGLVSAENVIPMAQMFDTVGWFSRDL 191
+VDFSLG DT G VRVP +YCG+ RPSH +V VIP+A D +GWF+RD
Sbjct: 151 AVAAGIVDFSLGIDTIGGVRVPGSYCGVLAFRPSHAVVPNNGVIPVAPSLDAIGWFARDP 210
Query: 192 STLSRVTKVLLPLPDDIVKQPTQVTIPMDCFQILGSLDDRTYQIINASVAKRFDSQILDN 251
S L RV +LL LP ++QP I DCF++ R Q++ SV K F Q+L +
Sbjct: 211 SVLRRVGHLLLRLPYADIRQPRHFYIADDCFEMSKVHARRLTQVVTKSVEKLFGRQVLGH 270
Query: 252 RNLGDFISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKANHAEWVNTVKP 311
NL ++++ +PS+ +S+ S+ AL S M+ L + +FK H EW+N+VKP
Sbjct: 271 VNLENYLASRIPSLRNNSNGHGDSKFSSLLAL---SRAMQFLHKHEFKDQHMEWINSVKP 327
Query: 312 NLGPGLRERILEAIASGDNES-LEDFQAIRAEFKSALAALLKDHGILAIPTVPGPPPKVG 370
+ + + S D ES + + Q R E ++AL ALLKD GIL IPTV G PPK+
Sbjct: 328 AVDACIVGNL-----SDDGESTINNSQDARKEVRAALGALLKDDGILVIPTVLGCPPKLN 382
Query: 371 MEAAPLENFRARAFSLLSIAGLSGFCQVSIPLGMRNGLPVSVSLVARHGADHFLLNVVEE 430
+++ + L S+A +SG CQV++PLG + PVSVSL+ARHG D FLL+ ++
Sbjct: 383 ARELSSQDYNVQTSCLTSLASMSGCCQVTVPLGTHDKCPVSVSLIARHGGDRFLLDTIQT 442
Query: 431 LYQTLIDE 438
+Y T+ ++
Sbjct: 443 IYATIQEQ 450
>Os02g0754500 Amidase family protein
Length = 613
Score = 294 bits (752), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 165/424 (38%), Positives = 225/424 (53%), Gaps = 7/424 (1%)
Query: 20 DYGAFMERF-----VXXXXXXXXXXXHGLTFAIKDIFDIAGRVTGFGNPDWARTHAPAAA 74
D+GAF RF GLTFA D F+I G V GFGNPDW RTH A
Sbjct: 54 DFGAFCYRFEIAPAPQPPPPAARQLLSGLTFAASDNFEIEGYVAGFGNPDWKRTHKAATR 113
Query: 75 TSPVVXXXXXXXXXXXXXXIMDEMAYSINGENTHYGTPTNPCXXXXXXXXXXXXXXXXXX 134
T+ V +MDE+ + ++G N H GTP NP
Sbjct: 114 TAVPVTMLQKQGGTYVGSTVMDELGFGVSGGNLHNGTPINPASPSLFPGGSCSGSAVAVS 173
Query: 135 XNLVDFSLGTDTGGSVRVPAAYCGIFGLRPSHGLVSAENVIPMAQMFDTVGWFSRDLSTL 194
LVDF+LGTDT G VR+PA +CG+ + SHG+VS I +Q DT+GWF+RD S L
Sbjct: 174 AQLVDFALGTDTTGDVRIPACFCGVLCFKSSHGVVSTLGTIANSQSLDTIGWFARDPSVL 233
Query: 195 SRVTKVLLPLPDDIVKQPTQVTIPMDCFQILGSLDDRTYQIINASVAKRFDSQILDNRNL 254
RV VLLP + Q Q+ DCFQ+L +++T +I ++ Q + N+
Sbjct: 234 HRVGDVLLPAATGGLTQTRQLFFADDCFQLLKVPNEKTVNVIENAIQTLPGYQPPKHINI 293
Query: 255 GDFISDNVPSIGKFITDFSESELPSVPALSVISHVMRGLQRSQFKANHAEWVNTVKPNLG 314
G++IS +VPS+ F E L + AL +S VM LQR +FK NH +WVNTVKP LG
Sbjct: 294 GEYISSHVPSLKDFCEPTVEM-LEGMSALKALSTVMLLLQRYEFKTNHEDWVNTVKPKLG 352
Query: 315 PGLRERILEAIASGDNESLEDFQAIRAEFKSALAALLKDHGILAIPTVPGPPPKVGMEAA 374
R+L+A+ S +++++ +R E ++AL LLKD GIL +PT G P K
Sbjct: 353 LDTSTRVLQAVNS-KSDNIKSLYIVRNELRAALKNLLKDTGILVLPTTAGYPLKRNARQR 411
Query: 375 PLENFRARAFSLLSIAGLSGFCQVSIPLGMRNGLPVSVSLVARHGADHFLLNVVEELYQT 434
F R + + IA LSG CQ IPLG N P+S+SL+A HG+D FLL V ++ +
Sbjct: 412 LSPGFEDRMSAFVGIATLSGCCQAVIPLGSHNDHPISLSLLAAHGSDKFLLRNVLYMFSS 471
Query: 435 LIDE 438
+ ++
Sbjct: 472 IKEQ 475
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.137 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,563,783
Number of extensions: 565251
Number of successful extensions: 1391
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1382
Number of HSP's successfully gapped: 4
Length of query: 445
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 341
Effective length of database: 11,605,545
Effective search space: 3957490845
Effective search space used: 3957490845
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)