Os04g0117800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amidase family protein.
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Os04g0117800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 93.88 | 0.455 | 10.7 | 1.86 | 1.3 | 2.04 | -0.708 | 1.39 | -0.544 | 24 | 1 | 1433 | -- | -- |
| 94.73 | 0.453 | 10.7 | 1.98 | 1.28 | 1.78 | -0.778 | -- | -0.524 | 24 | 1.388 | 1436 | -- | -- |
| 95.74 | 0.456 | 10.7 | 1.88 | 1.37 | 2.05 | -- | 1.42 | -0.543 | 23.8 | 0.9996 | 1419 | -- | -- |
| 96.82 | 0.458 | 10.7 | 1.98 | 1.29 | 1.73 | -- | -- | -0.54 | 23.9 | 1.721 | 1433 | -- | -- |
| 124.85 | 0.52 | 10.7 | 2.17 | -- | 2.78 | -- | 0.602 | -0.448 | -- | 2.171 | 1613 | -- | -- |
| 130.33 | 0.535 | 10.8 | 1.57 | 1.26 | -- | -0.913 | -- | -0.755 | 24 | -- | -- | -- | -- |
| 133.84 | 0.542 | 10.7 | 1.61 | 1.27 | -- | -- | -- | -0.75 | 23.8 | -- | -- | -- | -- |
| 121.72 | 0.514 | 10.7 | 2.03 | -- | 2.73 | -- | -- | -0.451 | -- | 2.205 | 1627 | -- | -- |
| 187.82 | 0.638 | 10.7 | -- | 1.14 | 0.888 | -- | -- | -0.676 | 23.9 | 9.369 | 1508 | -- | -- |
| 234.99 | 0.716 | 10.7 | 1.65 | -- | -- | -- | -- | -0.734 | -- | -- | -- | -- | -- |
| 201.95 | 0.665 | 10.8 | -- | 1.29 | -- | -- | -- | -0.929 | 23.9 | -- | -- | -- | -- |
| 212.25 | 0.681 | 10.8 | -- | -- | 0.983 | -- | -- | -0.905 | -- | 9.369 | 1508 | -- | -- |
| 306.38 | 0.817 | 10.8 | -- | -- | -- | -- | -- | -0.916 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 92.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 4 | 92.72 | radiation | 1 | 1440 | < th | dose dependent | sin | 14 | NA |
| 10 | 92.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 15 |
| 11 | 92.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 13 |
| 16 | 93.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 18 |
| 18 | 93.23 | radiation | 1 | 1440 | < th | dose dependent | rect. | 14 | 22 |
| 48 | 93.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 52 | 93.80 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 54 | 93.82 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 58 | 93.84 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 19 |
| 61 | 93.86 | radiation | 1 | 1440 | < th | dose dependent | rect. | 10 | 22 |
| 63 | 93.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 18 |
| 85 | 93.91 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 23 |
| 92 | 93.93 | radiation | 1 | 1440 | < th | dose independent | sin | 14 | NA |
| 114 | 93.98 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 129 | 94.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 139 | 94.33 | radiation | 1 | 1440 | > th | dose independent | sin | 14 | NA |
| 140 | 94.38 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 144 | 94.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 6 |
| 165 | 94.55 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 181 | 94.60 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 184 | 94.61 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 203 | 94.75 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 213 | 94.87 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 4 |
| 225 | 94.88 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 229 | 94.95 | radiation | 1 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 232 | 94.96 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 250 | 95.21 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 255 | 95.27 | wind | 5 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 261 | 95.31 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 267 | 95.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 268 | 95.36 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 8 |
| 275 | 95.40 | radiation | 1 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 285 | 95.44 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 18 |
| 291 | 95.46 | wind | 7 | 43200 | < th | dose independent | sin | 15 | NA |
| 294 | 95.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 304 | 95.47 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 328 | 95.50 | wind | 7 | 43200 | > th | dose independent | sin | 15 | NA |
| 342 | 95.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 365 | 95.54 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 366 | 95.54 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 15 |
| 378 | 95.56 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 383 | 95.56 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 434 | 95.74 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 481 | 95.88 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 3 |
| 484 | 95.88 | wind | 5 | 43200 | > th | dose dependent | sin | 15 | NA |
| 494 | 95.93 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 502 | 95.95 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 503 | 95.95 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 15 |
| 548 | 95.96 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 576 | 96.01 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 660 | 96.25 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 13 |
| 669 | 96.30 | wind | 5 | 43200 | > th | dose dependent | rect. | 15 | 15 |
| 670 | 96.33 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 675 | 96.36 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 711 | 96.47 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 18 |
| 731 | 96.51 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 829 | 96.79 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 832 | 96.80 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 960 | 97.17 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 981 | 97.23 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 992 | 97.25 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 995 | 97.25 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 2 |