Os04g0118100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast Toc64-2.
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Os04g0118100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast Toc64-2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 70.14 | 0.393 | 11.9 | 1.81 | 1.44 | -0.207 | 0.574 | 4.07 | -0.385 | 22.3 | 15.26 | 114 | -- | -- |
| 81.98 | 0.422 | 11.9 | 1.54 | 1.44 | -0.361 | 0.119 | -- | -0.419 | 22.3 | 12.11 | 37603 | -- | -- |
| 70.85 | 0.392 | 11.9 | 1.76 | 1.45 | -0.0987 | -- | 4.05 | -0.4 | 22.4 | 14.05 | 228 | -- | -- |
| 80.66 | 0.418 | 11.9 | 1.41 | 1.48 | -0.365 | -- | -- | -0.433 | 22.3 | 12.27 | 11643 | -- | -- |
| 182.93 | 0.633 | 11.8 | 1.85 | -- | -1.21 | -- | 3.37 | -0.284 | -- | 9.231 | 714 | -- | -- |
| 82.65 | 0.426 | 12 | 1.16 | 1.45 | -- | 0.0108 | -- | -0.57 | 22.4 | -- | -- | -- | -- |
| 82.65 | 0.426 | 12 | 1.16 | 1.45 | -- | -- | -- | -0.57 | 22.4 | -- | -- | -- | -- |
| 192.64 | 0.649 | 11.9 | 1.39 | -- | -1.14 | -- | -- | -0.413 | -- | 9.231 | 714 | -- | -- |
| 93.81 | 0.451 | 12 | -- | 1.44 | 0.739 | -- | -- | -0.954 | 22.4 | 18.2 | 47520 | -- | -- |
| 211.56 | 0.68 | 11.9 | 1.18 | -- | -- | -- | -- | -0.566 | -- | -- | -- | -- | -- |
| 117.87 | 0.508 | 12 | -- | 1.46 | -- | -- | -- | -0.699 | 22.4 | -- | -- | -- | -- |
| 208.26 | 0.672 | 12 | -- | -- | 1.38 | -- | -- | -0.886 | -- | 16.7 | 742 | -- | -- |
| 248.26 | 0.735 | 11.9 | -- | -- | -- | -- | -- | -0.697 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.74 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 7 |
| 5 | 63.81 | humidity | 80 | 30 | < th | dose independent | rect. | 9 | 8 |
| 21 | 65.18 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 8 |
| 30 | 65.56 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 34 | 65.64 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 17 |
| 36 | 65.83 | wind | 1 | 270 | > th | dose independent | rect. | 14 | 17 |
| 44 | 66.03 | temperature | 20 | 90 | > th | dose independent | rect. | 9 | 6 |
| 53 | 66.16 | humidity | 90 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 54 | 66.17 | radiation | 20 | 4320 | < th | dose independent | rect. | 21 | 9 |
| 63 | 66.30 | temperature | 15 | 270 | > th | dose independent | rect. | 7 | 7 |
| 64 | 66.30 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 66 | 66.31 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 15 |
| 86 | 66.49 | humidity | 90 | 270 | < th | dose independent | sin | 2 | NA |
| 89 | 66.49 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 10 |
| 99 | 66.56 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 8 |
| 123 | 66.77 | radiation | 1 | 270 | > th | dose independent | sin | 2 | NA |
| 128 | 66.78 | humidity | 70 | 270 | > th | dose dependent | sin | 4 | NA |
| 132 | 66.82 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 8 |
| 133 | 66.82 | temperature | 10 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 135 | 66.84 | humidity | 70 | 90 | > th | dose dependent | sin | 2 | NA |
| 154 | 66.92 | humidity | 70 | 270 | > th | dose dependent | rect. | 2 | 13 |
| 161 | 66.97 | humidity | 90 | 10 | < th | dose dependent | rect. | 9 | 6 |
| 162 | 66.98 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 21 |
| 178 | 67.10 | humidity | 80 | 270 | > th | dose independent | rect. | 2 | 12 |
| 185 | 67.14 | wind | 1 | 270 | > th | dose independent | rect. | 23 | 9 |
| 189 | 67.16 | humidity | 80 | 270 | > th | dose independent | sin | 5 | NA |
| 206 | 67.22 | humidity | 90 | 270 | < th | dose independent | rect. | 7 | 15 |
| 209 | 67.23 | temperature | 10 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 212 | 67.23 | humidity | 80 | 30 | > th | dose dependent | rect. | 6 | 12 |
| 216 | 67.25 | temperature | 20 | 270 | > th | dose independent | rect. | 7 | 19 |
| 238 | 67.35 | radiation | 1 | 270 | > th | dose independent | rect. | 4 | 11 |
| 294 | 67.47 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 19 |
| 296 | 67.48 | temperature | 20 | 30 | > th | dose independent | rect. | 20 | 21 |
| 361 | 67.75 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 23 | 9 |
| 381 | 67.82 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 6 |
| 388 | 67.88 | temperature | 10 | 43200 | > th | dose independent | rect. | 14 | 6 |
| 445 | 68.07 | radiation | 1 | 270 | < th | dose independent | rect. | 4 | 7 |
| 449 | 68.08 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 1 | 6 |
| 462 | 68.11 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 6 |
| 475 | 68.14 | radiation | 20 | 10 | < th | dose independent | rect. | 17 | 16 |
| 487 | 68.19 | wind | 1 | 270 | > th | dose independent | rect. | 1 | 7 |
| 492 | 68.20 | radiation | 1 | 270 | < th | dose independent | sin | 3 | NA |
| 549 | 68.34 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 8 |
| 575 | 68.39 | humidity | 90 | 90 | < th | dose dependent | sin | 3 | NA |
| 625 | 68.50 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 14 |
| 679 | 68.61 | wind | 7 | 10 | < th | dose independent | rect. | 9 | 8 |
| 691 | 68.63 | humidity | 90 | 270 | < th | dose dependent | sin | 5 | NA |
| 715 | 68.68 | humidity | 90 | 30 | < th | dose dependent | rect. | 24 | 17 |
| 717 | 68.68 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 19 |
| 735 | 68.72 | radiation | 1 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 736 | 68.73 | temperature | 20 | 30 | > th | dose independent | rect. | 22 | 17 |
| 757 | 68.76 | wind | 1 | 90 | > th | dose independent | rect. | 17 | 16 |
| 763 | 68.77 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 786 | 68.80 | radiation | 40 | 90 | < th | dose dependent | rect. | 14 | 19 |
| 801 | 68.84 | wind | 1 | 270 | > th | dose independent | rect. | 3 | 4 |
| 839 | 68.88 | humidity | 90 | 30 | < th | dose dependent | rect. | 20 | 21 |
| 854 | 68.91 | humidity | 80 | 10 | > th | dose independent | rect. | 6 | 12 |
| 892 | 68.96 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 18 |
| 954 | 69.08 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 959 | 69.09 | radiation | 1 | 270 | < th | dose independent | rect. | 3 | 14 |
| 987 | 69.12 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 19 |