BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0850800 Os03g0850800|AK101366
(214 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0850800 Conserved hypothetical protein 388 e-108
Os07g0189800 Conserved hypothetical protein 188 2e-48
Os07g0189700 Conserved hypothetical protein 185 2e-47
Os07g0475000 Conserved hypothetical protein 150 6e-37
Os08g0102800 Conserved hypothetical protein 77 8e-15
>Os03g0850800 Conserved hypothetical protein
Length = 214
Score = 388 bits (996), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/214 (92%), Positives = 199/214 (92%)
Query: 1 MEKTXXXXXXXXXXXXXXXGDGSEPTPTPTPWPAQFHAKLLMEFHGNLSLADLWYDWPGG 60
MEKT GDGSEPTPTPTPWPAQFHAKLLMEFHGNLSLADLWYDWPGG
Sbjct: 1 MEKTAAPLLLAAALFLVVAGDGSEPTPTPTPWPAQFHAKLLMEFHGNLSLADLWYDWPGG 60
Query: 61 RNLHVIRYQLAADEPFYDNEWNNGTSFFYTPARRACRSAAVGVGILPPNWLVPGSVYLGR 120
RNLHVIRYQLAADEPFYDNEWNNGTSFFYTPARRACRSAAVGVGILPPNWLVPGSVYLGR
Sbjct: 61 RNLHVIRYQLAADEPFYDNEWNNGTSFFYTPARRACRSAAVGVGILPPNWLVPGSVYLGR 120
Query: 121 HPADGFDCHVWAKADFITYYEDTLTKRPVKWVFYTGRTSHVMSFEEGAVLEDAEWQAPEY 180
HPADGFDCHVWAKADFITYYEDTLTKRPVKWVFYTGRTSHVMSFEEGAVLEDAEWQAPEY
Sbjct: 121 HPADGFDCHVWAKADFITYYEDTLTKRPVKWVFYTGRTSHVMSFEEGAVLEDAEWQAPEY 180
Query: 181 CFGKGDETETSNDNALISEPVAGHDKGFFPRREF 214
CFGKGDETETSNDNALISEPVAGHDKGFFPRREF
Sbjct: 181 CFGKGDETETSNDNALISEPVAGHDKGFFPRREF 214
>Os07g0189800 Conserved hypothetical protein
Length = 226
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/168 (54%), Positives = 113/168 (67%), Gaps = 11/168 (6%)
Query: 35 QFHAKLLMEFH-----GNLSLADLWYDWPGGRNLHVIRYQLAADEPFYDNEWNNGTSFFY 89
+FHA L G L + DL+YDWPGGRNL+++ QL+ D P YD EW NGTS+++
Sbjct: 37 RFHAVLFTNLTQTSGGGKLQMTDLYYDWPGGRNLNLVAGQLSGD-PVYDVEWTNGTSYYF 95
Query: 90 TPARRACRSAAVGVGILPPNWLVPGSVYLGRHPADGFDCHVWAKADFITYYEDTLTKRPV 149
A +CR+ VGILPP+WL G+ YLGR DGFDCHVW K DFI YYED +T RPV
Sbjct: 96 DSA--SCRTLLFPVGILPPDWLAAGAAYLGREAVDGFDCHVWTKVDFIWYYEDVVTHRPV 153
Query: 150 KWVFYTGRTSHVMSFEEGAVLEDAEWQAPEYCFGKGD---ETETSNDN 194
+W FYTG HVMSFE G LED++WQAP YCF + ++T+NDN
Sbjct: 154 RWNFYTGMQQHVMSFEVGGALEDSKWQAPAYCFNDQEAATNSDTANDN 201
>Os07g0189700 Conserved hypothetical protein
Length = 225
Score = 185 bits (470), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 91/177 (51%), Positives = 116/177 (65%), Gaps = 14/177 (7%)
Query: 30 TPWPAQFHAKLLMEFHGN---LSLADLWYDWPGGRNLHVIRYQLAADEPFYDNEWNNGTS 86
TPWP QFHA + G+ L L DL+YDWP GRNL++IR QL+ D P YD EW NGTS
Sbjct: 25 TPWPEQFHAVVFTNLTGSGGRLQLIDLYYDWPRGRNLNLIRGQLSGD-PTYDVEWTNGTS 83
Query: 87 FFYTPARRACRSAAVGVGILPPNWLVPGSVYLGRHPADGFDCHVWAKADFITYYEDTLTK 146
+F+ +CR+ VG+LPP+WL G+VYLGR GFDCH+W K D + YYED +T
Sbjct: 84 YFFNAT--SCRTKLFPVGLLPPDWLAAGAVYLGRETVAGFDCHLWTKVDIVWYYEDVVTH 141
Query: 147 RPVKWVFYTGRTSHVMSFEEGAVLEDAEWQAPEYCFGKGDETETSNDNALISEPVAG 203
RPV+W F+ G HVMSFE G VLED++WQAP CF S+ + +I++P A
Sbjct: 142 RPVRWNFFNGMQQHVMSFEVGGVLEDSKWQAPARCF--------SDQHTVIADPGAA 190
>Os07g0475000 Conserved hypothetical protein
Length = 246
Score = 150 bits (380), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 82/172 (47%), Positives = 104/172 (60%), Gaps = 16/172 (9%)
Query: 25 PTPTPTPWPAQFHAKLLMEFHGN--------LSLADLWYDWPGGRNLHVIRYQLAA-DEP 75
P P P WP FHA+L + L +ADL+YDW RNL++IRYQLAA D+P
Sbjct: 27 PEPKPARWPDVFHARLFTNLTNHSAASTGPPLRVADLYYDWSRRRNLNLIRYQLAAADDP 86
Query: 76 FYDNEWNNGTSFFYTPARRACRSAAVGVGILPPNWLVPGS--VYLGRHPADGFDCHVWAK 133
YD EW+NGT+F++ R+CR+ VG+L P WL G VYLGR G +C VW K
Sbjct: 87 LYDVEWDNGTTFYFD--SRSCRTERFPVGVLRPGWLADGGGVVYLGRWRTGGIECDVWDK 144
Query: 134 ADFITYYEDTLTKRPVKWVFY--TGRTSHVMSFEEGAVLE-DAEWQAPEYCF 182
F+ YY++ T RPV+W F TG VMSFE G LE D++WQAP +CF
Sbjct: 145 LGFVVYYQEVATGRPVRWNFLDKTGIQQFVMSFEVGVTLEDDSQWQAPAHCF 196
>Os08g0102800 Conserved hypothetical protein
Length = 156
Score = 77.4 bits (189), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 23 SEPTPTPTPWPAQFHAKLL---MEFH----GNLSLADLWYDWPGGRNLHVIRYQLAADEP 75
+ P T WP +FHA ++ + H G L L +++YDWP GR+L+++R QL+ D P
Sbjct: 31 TPPVSTAYEWPERFHAVVVSINLTNHDRGGGRLQLIEIYYDWPHGRDLNIVRDQLSGDPP 90
Query: 76 FYDNEWNNGTSFFYTPARRACRSAAVGVGILPPNWLVP 113
Y+ EW NGTS+ + A +CR+ VGILP + + P
Sbjct: 91 LYNVEWVNGTSYLFDTAASSCRTFQFPVGILPRSGVTP 128
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.138 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,081,892
Number of extensions: 432231
Number of successful extensions: 902
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 889
Number of HSP's successfully gapped: 5
Length of query: 214
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 117
Effective length of database: 11,971,043
Effective search space: 1400612031
Effective search space used: 1400612031
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 154 (63.9 bits)