BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0850000 Os03g0850000|AK105776
         (277 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0850000  Glucose/ribitol dehydrogenase family protein        498   e-141
Os08g0510400  Glucose/ribitol dehydrogenase family protein        106   1e-23
Os05g0140800  Similar to Dormancy related protein (Fragment)       67   2e-11

>Os03g0850000 Glucose/ribitol dehydrogenase family protein
          Length = 277

 Score =  498 bits (1283), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 247/277 (89%), Positives = 247/277 (89%)

Query: 1   MLNESMGEGDAAYAKRVLLTAAGDDVSRGIASTLATHGCRLVLVXXXXXXXXXXXXXXXX 60
           MLNESMGEGDAAYAKRVLLTAAGDDVSRGIASTLATHGCRLVLV                
Sbjct: 1   MLNESMGEGDAAYAKRVLLTAAGDDVSRGIASTLATHGCRLVLVGDEGALAGTAEEARRG 60

Query: 61  XXXXXXXXXXXXXXHGCDEAAVDAAVGTAWRCFDGLDAMVNCYSYEGEVQDCLNISEDEF 120
                         HGCDEAAVDAAVGTAWRCFDGLDAMVNCYSYEGEVQDCLNISEDEF
Sbjct: 61  GGGGDAVAVVGLDLHGCDEAAVDAAVGTAWRCFDGLDAMVNCYSYEGEVQDCLNISEDEF 120

Query: 121 KKTMKANVMTPWFLVKAIAKRLRDSESSCGGSVVFLTQIIGAERGLYPGAAAYGTSLGAI 180
           KKTMKANVMTPWFLVKAIAKRLRDSESSCGGSVVFLTQIIGAERGLYPGAAAYGTSLGAI
Sbjct: 121 KKTMKANVMTPWFLVKAIAKRLRDSESSCGGSVVFLTQIIGAERGLYPGAAAYGTSLGAI 180

Query: 181 HQLVRLSAMELGKHKMRVNAVCRGLHLGDRFPVWVGKEKAEKATGEVMPLRRWLDPEKDV 240
           HQLVRLSAMELGKHKMRVNAVCRGLHLGDRFPVWVGKEKAEKATGEVMPLRRWLDPEKDV
Sbjct: 181 HQLVRLSAMELGKHKMRVNAVCRGLHLGDRFPVWVGKEKAEKATGEVMPLRRWLDPEKDV 240

Query: 241 ASTVLYLVGDESRYMTGSTIFVDGAQSIVRPRMRSFM 277
           ASTVLYLVGDESRYMTGSTIFVDGAQSIVRPRMRSFM
Sbjct: 241 ASTVLYLVGDESRYMTGSTIFVDGAQSIVRPRMRSFM 277



>Os08g0510400 Glucose/ribitol dehydrogenase family protein
          Length = 284

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/188 (29%), Positives = 101/188 (53%), Gaps = 2/188 (1%)

Query: 81  AVDAAVGTAWRCFDGLDAMVNCYSYEGEVQDCLNISEDEFKKTMKANVMTPWFLVKAIAK 140
           A++AAV +AW  F  +D ++N     G V   L+  EDE++  +K N+   W + K + +
Sbjct: 90  ALEAAVQSAWDAFGRIDVLINNAGLRGGVHSPLDWPEDEWETLIKTNLTGSWLVAKHVCR 149

Query: 141 RLRDSESSCGGSVVFLTQIIGAERGLYPGAAAYGTSLGAIHQLVRLSAMELGKHKMRVNA 200
           R+RD++    GSV+ ++ + G  RG  PG+  Y  S  A+H   +L A+ELG + +RVN+
Sbjct: 150 RMRDAK--LKGSVINISSVSGLNRGHLPGSTGYAASKSAMHYATKLMALELGAYGIRVNS 207

Query: 201 VCRGLHLGDRFPVWVGKEKAEKATGEVMPLRRWLDPEKDVASTVLYLVGDESRYMTGSTI 260
           +  G+   +     + K+       +++PL+     +  + S V +L+ + S Y+TG+  
Sbjct: 208 IAPGIFKSEITAPLLQKKWLSTVVSKIVPLKTHGTTDPALTSLVRFLIHETSSYVTGNIF 267

Query: 261 FVDGAQSI 268
            VD   ++
Sbjct: 268 IVDSGATL 275



>Os05g0140800 Similar to Dormancy related protein (Fragment)
          Length = 365

 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 5/171 (2%)

Query: 96  LDAMVNCYSYEGEVQDCLNISEDEFKKTMKANVMTPWFLVKAIAKRLRDSESSCGGSV-- 153
           +D +VN  + + E     +I+ED+ ++  + N+ + +F+ K   KR+RD     G     
Sbjct: 192 IDILVNNAAEQYERPSITDITEDDLERVFRTNIFSYFFMSKHAVKRMRDRRGGAGAGGCS 251

Query: 154 VFLTQIIGAERGLYPGAAAYGTSLGAIHQLVRLSAMELGKHKMRVNAVCRGLHLGDRFPV 213
           +  T  I A +G       Y  + GAI    R  A++L +  +RVN V  G       P 
Sbjct: 252 IINTSSINAYKG-NKTLLDYTATKGAIVAFTRALALQLAEEGIRVNGVAPGPIWTPLIPA 310

Query: 214 WVGKEKAEKATGEVMPLRRWLDPEKDVASTVLYLVGDESRYMTGSTIFVDG 264
              +EK  +  G  +P+ R   P  +VA + ++L  D++ YM+G  + V+G
Sbjct: 311 SFAEEKVRQ-FGSQVPMGRAGQP-SEVAPSFVFLASDDASYMSGQMLHVNG 359



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.135    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,195,120
Number of extensions: 291890
Number of successful extensions: 839
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 860
Number of HSP's successfully gapped: 3
Length of query: 277
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 178
Effective length of database: 11,866,615
Effective search space: 2112257470
Effective search space used: 2112257470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 155 (64.3 bits)