Os05g0140800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Dormancy related protein (Fragment).
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Os05g0140800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Dormancy related protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 76.41 | 0.411 | 2.87 | -0.124 | 0.104 | 0.901 | 0.0582 | 2.31 | 0.0965 | 4.7 | 62.76 | 15 | -- | -- |
| 78.82 | 0.413 | 2.87 | -0.0978 | 0.0963 | 0.959 | -0.242 | -- | 0.1 | 3.74 | 60 | 15 | -- | -- |
| 76.41 | 0.407 | 2.87 | -0.121 | 0.104 | 1 | -- | 2.62 | 0.0955 | 4.69 | 63.29 | 14 | -- | -- |
| 78.82 | 0.414 | 2.86 | -0.101 | 0.108 | 1.02 | -- | -- | 0.108 | 3.85 | 60 | 15 | -- | -- |
| 76.99 | 0.409 | 2.87 | -0.116 | -- | 1.08 | -- | 2.88 | 0.0983 | -- | 63.63 | 14 | -- | -- |
| 83.38 | 0.428 | 2.87 | -0.0958 | 0.063 | -- | 0.412 | -- | 0.0915 | 8.82 | -- | -- | -- | -- |
| 83.72 | 0.428 | 2.87 | -0.0847 | 0.0929 | -- | -- | -- | 0.09 | 5.96 | -- | -- | -- | -- |
| 79.43 | 0.415 | 2.86 | -0.0938 | -- | 0.986 | -- | -- | 0.111 | -- | 60 | 15 | -- | -- |
| 79.07 | 0.414 | 2.86 | -- | 0.105 | 1.01 | -- | -- | 0.115 | 4.12 | 60 | 15 | -- | -- |
| 84.16 | 0.429 | 2.87 | -0.0819 | -- | -- | -- | -- | 0.0921 | -- | -- | -- | -- | -- |
| 83.91 | 0.428 | 2.86 | -- | 0.0916 | -- | -- | -- | 0.0994 | 6 | -- | -- | -- | -- |
| 79.67 | 0.416 | 2.86 | -- | -- | 0.977 | -- | -- | 0.118 | -- | 60 | 15 | -- | -- |
| 84.34 | 0.429 | 2.86 | -- | -- | -- | -- | -- | 0.101 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 75.98 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 10 | 3 |
| 2 | 76.00 | humidity | 90.0 | 720 | > th | dose independent | rect. | 10 | 3 |
| 3 | 76.19 | wind | 1.0 | 90 | < th | dose dependent | rect. | 7 | 5 |
| 4 | 76.36 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 4 |
| 6 | 76.36 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 11 | 76.42 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 9 | 2 |
| 13 | 76.42 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 9 | 2 |
| 35 | 77.05 | wind | 1.0 | 90 | < th | dose dependent | rect. | 11 | 1 |
| 36 | 77.27 | wind | 1.0 | 10 | < th | dose dependent | rect. | 11 | 1 |
| 50 | 77.60 | temperature | 25.0 | 90 | < th | dose dependent | rect. | 10 | 2 |
| 52 | 77.64 | wind | 1.0 | 90 | < th | dose independent | rect. | 11 | 1 |
| 54 | 77.68 | wind | 1.0 | 90 | < th | dose independent | rect. | 7 | 5 |
| 64 | 78.10 | wind | 1.0 | 10 | < th | dose independent | rect. | 11 | 1 |
| 85 | 78.57 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 94 | 78.71 | precipitation | 0.1 | 720 | > th | dose independent | rect. | 6 | 1 |
| 95 | 78.71 | precipitation | 0.1 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 98 | 78.83 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 101 | 78.89 | wind | 1.0 | 30 | < th | dose dependent | rect. | 7 | 19 |
| 140 | 79.19 | atmosphere | 1010.0 | 1440 | < th | dose independent | rect. | 12 | 2 |
| 143 | 79.23 | atmosphere | 1010.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 152 | 79.33 | radiation | 10.0 | 270 | < th | dose independent | rect. | 8 | 2 |
| 153 | 79.34 | radiation | 40.0 | 30 | > th | dose dependent | rect. | 11 | 4 |
| 204 | 79.46 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 205 | 79.49 | temperature | 20.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 206 | 79.49 | radiation | 40.0 | 30 | > th | dose independent | rect. | 11 | 1 |
| 214 | 79.52 | temperature | 25.0 | 10 | < th | dose independent | rect. | 12 | 1 |
| 222 | 79.58 | wind | 1.0 | 30 | < th | dose independent | rect. | 6 | 20 |
| 226 | 79.61 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 228 | 79.62 | humidity | 90.0 | 1440 | < th | dose independent | rect. | 10 | 2 |
| 235 | 79.65 | radiation | 40.0 | 30 | > th | dose dependent | sin | 20 | NA |
| 237 | 79.65 | wind | 3.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 242 | 79.66 | wind | 1.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 265 | 79.68 | humidity | 80.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 292 | 79.70 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 307 | 79.75 | radiation | 40.0 | 30 | > th | dose dependent | no | NA | NA |
| 480 | 79.76 | wind | 3.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 503 | 79.77 | humidity | 80.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 535 | 79.84 | humidity | 90.0 | 270 | > th | dose independent | rect. | 8 | 9 |
| 544 | 79.90 | wind | 9.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 545 | 79.90 | wind | 1.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 546 | 79.90 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 548 | 79.90 | temperature | 30.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 549 | 79.90 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 553 | 79.90 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 555 | 79.90 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 560 | 79.90 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 562 | 79.90 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 564 | 79.90 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 569 | 79.90 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 589 | 80.01 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 725 | 80.19 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 731 | 80.20 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 20 | 1 |
| 733 | 80.20 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 8 | 2 |
| 766 | 80.25 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 19 | 4 |