BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0843600 Os03g0843600|AK068216
(893 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0843600 Protein of unknown function DUF1012 family pro... 1513 0.0
Os01g0870100 Protein of unknown function DUF1012 family pro... 957 0.0
Os03g0163100 Protein of unknown function DUF1012 family pro... 167 5e-41
AK110373 101 2e-21
>Os03g0843600 Protein of unknown function DUF1012 family protein
Length = 893
Score = 1513 bits (3918), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 769/893 (86%), Positives = 769/893 (86%)
Query: 1 MPLDPDSSPAPPHRDWXXXXXXXXXXSSRARTPRAPFPSTSRSSNXXXXXXXXXXXXXXX 60
MPLDPDSSPAPPHRDW SSRARTPRAPFPSTSRSSN
Sbjct: 1 MPLDPDSSPAPPHRDWFFPPAPPFLPSSRARTPRAPFPSTSRSSNPYSFPDRRPPPTPRS 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYAGVRRGDVRTLTXXXXXXXXXXXXXXQ 120
YAGVRRGDVRTLT Q
Sbjct: 61 RSRSPLPPPEQQKQQQPPPTTPPPAPRRRDPRYAGVRRGDVRTLTAEKAAAAAAVPTAAQ 120
Query: 121 VHGSKSAASATTLRWSGMVSVAAIVLCFSSLVRSNSSLHDQVHHLKAQLAEATTKLQSCI 180
VHGSKSAASATTLRWSGMVSVAAIVLCFSSLVRSNSSLHDQVHHLKAQLAEATTKLQSCI
Sbjct: 121 VHGSKSAASATTLRWSGMVSVAAIVLCFSSLVRSNSSLHDQVHHLKAQLAEATTKLQSCI 180
Query: 181 TESSMDMSSILSYQSNNSTSQNRGXXXXXXXXXXXXXXXXXXXXKYMDLFLKLRSSQDSE 240
TESSMDMSSILSYQSNNSTSQNRG KYMDLFLKLRSSQDSE
Sbjct: 181 TESSMDMSSILSYQSNNSTSQNRGLKNFSLLLSLSTLYAPLLILKYMDLFLKLRSSQDSE 240
Query: 241 EEVPINKRLAYRVDIFLSLQPYAKPXXXXXXXXXXXXXXXXXXXXXNXXXXXXXXXXXXT 300
EEVPINKRLAYRVDIFLSLQPYAKP N T
Sbjct: 241 EEVPINKRLAYRVDIFLSLQPYAKPLVLLVATLLLIGLGGLALYGVNDDSLLDCLWLSWT 300
Query: 301 FVADSGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKGRSEVIEQS 360
FVADSGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKGRSEVIEQS
Sbjct: 301 FVADSGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKGRSEVIEQS 360
Query: 361 HTLVLGWSDKLGSLLNQIAIANESLGGGTIVVMAEKDKEEMEADIAKMEFDLKGTAIICR 420
HTLVLGWSDKLGSLLNQIAIANESLGGGTIVVMAEKDKEEMEADIAKMEFDLKGTAIICR
Sbjct: 361 HTLVLGWSDKLGSLLNQIAIANESLGGGTIVVMAEKDKEEMEADIAKMEFDLKGTAIICR 420
Query: 421 SGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLRGHIVVELS 480
SGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLRGHIVVELS
Sbjct: 421 SGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLRGHIVVELS 480
Query: 481 DLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQ 540
DLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQ
Sbjct: 481 DLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYIKRWPQ 540
Query: 541 LDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIAEDDDTYAPAP 600
LDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIAEDDDTYAPAP
Sbjct: 541 LDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIAEDDDTYAPAP 600
Query: 601 LPKVMRGYLPKDFVVPKSPERILFCGWRRDMEDMIMVLDAFLAPGSELWMFNDVPEMDRE 660
LPKVMRGYLPKDFVVPKSPERILFCGWRRDMEDMIMVLDAFLAPGSELWMFNDVPEMDRE
Sbjct: 601 LPKVMRGYLPKDFVVPKSPERILFCGWRRDMEDMIMVLDAFLAPGSELWMFNDVPEMDRE 660
Query: 661 RKLIDGGLDFSRLENITLVHREGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSR 720
RKLIDGGLDFSRLENITLVHREGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSR
Sbjct: 661 RKLIDGGLDFSRLENITLVHREGNAVIRRHLESLPLESFDSILILADESVEDSAIQADSR 720
Query: 721 SLATLLLIRDIQAKRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRTKN 780
SLATLLLIRDIQAKRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRTKN
Sbjct: 721 SLATLLLIRDIQAKRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRTKN 780
Query: 781 LLSVSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEEL 840
LLSVSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEEL
Sbjct: 781 LLSVSKISDYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEEL 840
Query: 841 NFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
NFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE
Sbjct: 841 NFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
>Os01g0870100 Protein of unknown function DUF1012 family protein
Length = 965
Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 475/674 (70%), Positives = 550/674 (81%), Gaps = 11/674 (1%)
Query: 225 KYMDLF-------LKLRSSQDSEEEVPINKRLAYRVDIFLSLQPYAKPXXXXXXXXXXXX 277
KY+D ++LRS+ EEEVP+ KR+AY+VD+F S PYAK
Sbjct: 272 KYIDQLRRRNTDSIRLRST---EEEVPLKKRIAYKVDVFFSGHPYAKLLALLLATIILIA 328
Query: 278 XXXXXXXXXNXXXXXXXXXXXXTFVADSGNHANAEGFGPKLVSVSISIGGMLVFAMMLGL 337
+ TFVADSGNHA+ G GP++VSVSIS GGMLVFA MLGL
Sbjct: 329 SGGIALYVVSGSGFLEALWLSWTFVADSGNHADQVGLGPRIVSVSISSGGMLVFATMLGL 388
Query: 338 VTDSISEKFDSLRKGRSEVIEQSHTLVLGWSDKLGSLLNQIAIANESLGGGTIVVMAEKD 397
V+D+ISEK DS RKG+SEVIE +H L+LGWSDKLGSLL Q+AIAN+S+GGG +VV+AE+D
Sbjct: 389 VSDAISEKVDSWRKGKSEVIEVNHILILGWSDKLGSLLKQLAIANKSIGGGVVVVLAERD 448
Query: 398 KEEMEADIAKMEFDLKGTAIICRSGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARA 457
KEEME DI K+EFD GT++ICRSGSPLILADLKKVSVSKARAI+VLA + NADQSDARA
Sbjct: 449 KEEMEMDIGKLEFDFMGTSVICRSGSPLILADLKKVSVSKARAIIVLASDENADQSDARA 508
Query: 458 LRTVLSLTGVKEGLRGHIVVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPG 517
LR VLSLTGVKEGLRGH+VVE+SDLDNE LVKLVGG+L+ETVVAHDVIGRLMIQCA QPG
Sbjct: 509 LRVVLSLTGVKEGLRGHVVVEMSDLDNEPLVKLVGGELIETVVAHDVIGRLMIQCALQPG 568
Query: 518 LAQIWEDILGFENCEFYIKRWPQLDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDF 577
LAQIWEDILGFEN EFYIKRWP+LDGM+F DVLISFPDA+PCG+K+AS GKI++NPD+
Sbjct: 569 LAQIWEDILGFENAEFYIKRWPELDGMRFGDVLISFPDAVPCGVKIASKAGKILMNPDND 628
Query: 578 YVLQEGDEVLVIAEDDDTYAPAPLPKVMRGYLPKDFVVPKSPERILFCGWRRDMEDMIMV 637
YVLQEGDEVLVIAEDDDTY PA LP+V +G+LP PK PE+ILFCGWRRD+ DMIMV
Sbjct: 629 YVLQEGDEVLVIAEDDDTYVPASLPQVRKGFLPNIPTPPKYPEKILFCGWRRDIHDMIMV 688
Query: 638 LDAFLAPGSELWMFNDVPEMDRERKLIDGGLDFSRLENITLVHREGNAVIRRHLESLPLE 697
L+AFLAPGSELWMFN+VPE +RERKL DGG+D L NI LVH+EGNAVIRRHLESLPLE
Sbjct: 689 LEAFLAPGSELWMFNEVPEKERERKLTDGGMDIYGLTNIKLVHKEGNAVIRRHLESLPLE 748
Query: 698 SFDSILILADESVEDSAIQADSRSLATLLLIRDIQAKRLPFREAMVSHVTRGSFCEGSWI 757
+FDSILILADESVEDS + +DSRSLATLLLIRDIQ+KRLP +E + S + FC SWI
Sbjct: 749 TFDSILILADESVEDSIVHSDSRSLATLLLIRDIQSKRLPSKE-LKSPLRYNGFCHSSWI 807
Query: 758 GEMQQASDKSVIISEILDPRTKNLLSVSKISDYVLSNELVSMALAMVAEDRQINDVLEEL 817
EMQ ASDKS+IISEILD RT+NL+SVSKISDYVLSNELVSMALAMVAED+QIN VLEEL
Sbjct: 808 REMQHASDKSIIISEILDSRTRNLVSVSKISDYVLSNELVSMALAMVAEDKQINRVLEEL 867
Query: 818 FAEQGNEMQIRPADLYLREDEELNFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSR 877
FAE+GNEM IR A+ YL E EEL+FF++M+R R+R E+VIGYRL + ++AIINP K
Sbjct: 868 FAEEGNEMCIRSAEFYLYEQEELSFFDIMVRARERDEVVIGYRLANDDQAIINPEQKSEI 927
Query: 878 RRWSAKDVFVVITE 891
R+WS DVFVVI++
Sbjct: 928 RKWSLDDVFVVISK 941
>Os03g0163100 Protein of unknown function DUF1012 family protein
Length = 858
Score = 167 bits (422), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 159/653 (24%), Positives = 299/653 (45%), Gaps = 104/653 (15%)
Query: 305 SGNHANAEGFGPKLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKG-RSEVIEQSHTL 363
S H + +++ ++I G+L ++ +L T+ + +R+G + +VIE H +
Sbjct: 233 SSTHLRQKTRIERVLGFFLAIWGILFYSRLLSATTEQFRIQMHKVREGAQQQVIEDDHII 292
Query: 364 VLGWSDKLGSLLNQIAIANES---LGGGT-----IVVMAEKDKEEMEADIAKMEFDLKGT 415
+ G + L S+LNQ+ +ES LG T I+++++ ++++E DL
Sbjct: 293 ICGVNSHLPSILNQLNKFHESSIRLGTATARKQRILLLSDLPRKQIEKLGDSFAKDLNHI 352
Query: 416 AIICRSGSPLILADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSLTGVKEGLRGHI 475
+ +S S + ++ + +KA++I++L + + D A ++L+L + +
Sbjct: 353 DVFTKSCSLSLTKSFERAAANKAKSIIILPAKNERYEVDTDAFLSLLALQSLPQIASIPT 412
Query: 476 VVELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCEFYI 535
+VE S+ L+K + G V+ V +L +QC+RQ GL +I+ +L + F +
Sbjct: 413 IVEASNSTTCDLLKSITGLNVQPV--EMAASKLFVQCSRQKGLIKIYRHLLNYHKNVFNL 470
Query: 536 KRWPQLDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVIA----- 590
+ ++ GM++ DV PDA+ CGI G + +P + VL E D++L+IA
Sbjct: 471 FSFREVVGMKYVDVRRRIPDAVVCGI---FRSGMMHFHPCEDEVLTEKDKLLLIAPVSWR 527
Query: 591 -EDDDTYAPAP--------------------------------LPKVMRGYLPKDFVVPK 617
T++ +P + K L K
Sbjct: 528 RRAQSTFSNSPNGAQNSSHYSESTEGQRSSSMALEVNETRLNSIRKRPSKTLSKSNDYTL 587
Query: 618 SP-ERILFCGWRRDMEDMIMVLDAFLAPGSELWMFNDVPEMDRERKLIDGGLDFSRLENI 676
P E +L GWR + DMI D +L PGS L + ++ P +ER I L +L+NI
Sbjct: 588 GPREHVLIVGWRPKVTDMIREYDNYLGPGSVLEILSETP--IKERSSIVNPLMQKQLKNI 645
Query: 677 TLVHREG---------NAVI-----RRHLESLPLESFDSILILADES-VEDSAIQADSRS 721
+ H+ G A+I R+H +++P S+++++D+ + Q D +
Sbjct: 646 KVNHQVGCPMNYDTLKEAIIKFKKSRKHDQNVPF----SVVVISDKDWLGGDTAQVDKQL 701
Query: 722 LATLLLIRDIQAKRLPFREAMVSHVTRGSFCEGSWIGEMQQASDKSVIISEILDPRTKNL 781
TLLL +I K + V H ++SEI+D
Sbjct: 702 AYTLLLAENICQK----HDIKVEH-----------------------LVSEIVDTGLGKQ 734
Query: 782 LSVSKIS-DYVLSNELVSMALAMVAEDRQINDVLEELFAEQGNEMQIRPADLYLREDEEL 840
+S K S ++ + E++S+ A VA ++N+V +++ +G+E+ I+ Y++E E++
Sbjct: 735 MSRIKPSLSFIGAEEVMSLVTAQVAGSSELNEVWKDILNAEGDEIYIKEIGFYMKEGEKI 794
Query: 841 NFFEVMLRGRQRKEIVIGYRLVDAERAIINPPDKVSRRRWSAKDVFVVITEKE 893
+F E+ R R+E+ +GY V ++ INP +K+ + D +VI+E E
Sbjct: 795 SFSELTERAILRREVAVGY--VKGKKQYINPTNKLELLSFEMTDQLIVISEFE 845
>AK110373
Length = 1065
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/293 (27%), Positives = 145/293 (49%), Gaps = 22/293 (7%)
Query: 317 KLVSVSISIGGMLVFAMMLGLVTDSISEKFDSLRKGRSEVIEQSHTLVLGWS------DK 370
++ S+ + + G++ FA++L LV S+ + +++ + S V+E H LVL W K
Sbjct: 144 QVSSIGLYLSGLIGFAVLLALVEQSVLQVYETRVELGSPVLETGHILVLCWCKSPADVSK 203
Query: 371 LGSLLNQIAIANESLGGGTIVVMAEKDKEEMEADIAKMEFDLK---GTAIICRSGSPLIL 427
L ++L Q+ A + GG TIV++ ++ K EME D+ + + G+ + R G+PL
Sbjct: 204 LETILRQLCAAYKCSGGRTIVILCQRRKTEME-DLLRNAIPQQQRGGSRFVFRQGNPLTA 262
Query: 428 ADLKKVSVSKARAIVVLAEEGNADQSDARALRTVLSL------TGVKEGL----RGHIVV 477
ADLK V+ A A++VLA+ + + VL L +EG GH+V
Sbjct: 263 ADLKLVAAGDASAVLVLADSAATADASDSQVLRVLVLLDESEVAARQEGRPRPSPGHVVA 322
Query: 478 ELSDLDNEVLVKLVGGDLVETVVAHDVIGRLMIQCARQPGLAQIWEDILGFENCE-FYIK 536
E+ D L+K V V + +H + + +P ++ + + + FEN ++
Sbjct: 323 EVLTNDAMPLLKFVPSKAVLPLPSHRLNATRLAVLVTRPVVSHLTDTLWDFENSSAVFMH 382
Query: 537 RWPQLDGMQFEDVLISFPDAIPCGIKVASYGGKIILNPDDFYVLQEGDEVLVI 589
+PQL G DV + F + I G+ AS G +++NP Y L + ++++
Sbjct: 383 HFPQLAGQTVADVALRFENGIVIGLLEAST-GFVLINPPPAYKLNADERIILL 434
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,615,015
Number of extensions: 948438
Number of successful extensions: 2304
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2291
Number of HSP's successfully gapped: 6
Length of query: 893
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 783
Effective length of database: 11,292,261
Effective search space: 8841840363
Effective search space used: 8841840363
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)