Os01g0870100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF1012 family protein.
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Os01g0870100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF1012 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.46 | 0.313 | 8.93 | 0.384 | 0.527 | -0.841 | -0.744 | -0.0681 | -0.0487 | 21.8 | 21.4 | 725 | -- | -- |
| 44.46 | 0.311 | 8.93 | 0.38 | 0.528 | -0.826 | -0.732 | -- | -0.0495 | 21.8 | 21.4 | 725 | -- | -- |
| 46.18 | 0.316 | 8.93 | 0.384 | 0.543 | -0.78 | -- | 0.309 | -0.0581 | 21.5 | 21.39 | 769 | -- | -- |
| 46.33 | 0.317 | 8.93 | 0.398 | 0.537 | -0.861 | -- | -- | -0.0502 | 21.4 | 21.36 | 780 | -- | -- |
| 62.49 | 0.368 | 8.92 | 0.378 | -- | -0.963 | -- | 0.164 | -0.0711 | -- | 22.28 | 733 | -- | -- |
| 51.01 | 0.335 | 8.91 | 0.576 | 0.597 | -- | -0.798 | -- | 0.0462 | 21.9 | -- | -- | -- | -- |
| 53.33 | 0.342 | 8.91 | 0.609 | 0.608 | -- | -- | -- | 0.0492 | 21.6 | -- | -- | -- | -- |
| 62.4 | 0.368 | 8.92 | 0.331 | -- | -1.05 | -- | -- | -0.0909 | -- | 22.21 | 772 | -- | -- |
| 49.98 | 0.329 | 8.95 | -- | 0.518 | -1.1 | -- | -- | -0.105 | 21.3 | 21.4 | 846 | -- | -- |
| 75.15 | 0.405 | 8.89 | 0.613 | -- | -- | -- | -- | 0.0479 | -- | -- | -- | -- | -- |
| 63.09 | 0.372 | 8.92 | -- | 0.609 | -- | -- | -- | -0.0186 | 21.7 | -- | -- | -- | -- |
| 65.06 | 0.376 | 8.94 | -- | -- | -1.25 | -- | -- | -0.149 | -- | 21.95 | 780 | -- | -- |
| 85.08 | 0.431 | 8.91 | -- | -- | -- | -- | -- | -0.0202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.92 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 9 |
| 11 | 41.53 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 21 | 41.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 6 |
| 24 | 41.85 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 1 |
| 27 | 41.88 | temperature | 20 | 720 | < th | dose dependent | rect. | 2 | 3 |
| 49 | 42.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 78 | 42.37 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 5 |
| 137 | 42.73 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 148 | 42.81 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 156 | 42.84 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 9 |
| 167 | 42.90 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 179 | 42.96 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 15 |
| 184 | 43.00 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 6 |
| 201 | 43.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 205 | 43.07 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 219 | 43.12 | radiation | 1 | 30 | > th | dose dependent | rect. | 5 | 7 |
| 239 | 43.16 | radiation | 1 | 30 | > th | dose dependent | rect. | 7 | 5 |
| 248 | 43.19 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 17 |
| 255 | 43.20 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 260 | 43.23 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 13 |
| 278 | 43.24 | radiation | 1 | 30 | > th | dose dependent | rect. | 16 | 20 |
| 289 | 43.28 | temperature | 10 | 720 | > th | dose dependent | sin | 6 | NA |
| 299 | 43.30 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 3 |
| 311 | 43.32 | radiation | 1 | 30 | > th | dose dependent | rect. | 11 | 1 |
| 328 | 43.36 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 338 | 43.37 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 13 |
| 388 | 43.50 | temperature | 20 | 720 | < th | dose dependent | sin | 9 | NA |
| 449 | 43.62 | temperature | 10 | 270 | > th | dose dependent | sin | 2 | NA |
| 513 | 43.74 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 531 | 43.77 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 19 |
| 578 | 43.83 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 12 | 15 |
| 583 | 43.85 | atmosphere | 1005 | 10 | > th | dose dependent | sin | 19 | NA |
| 673 | 43.95 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 900 | 44.21 | radiation | 40 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 920 | 44.24 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 935 | 44.25 | atmosphere | 1010 | 30 | < th | dose dependent | rect. | 12 | 18 |
| 970 | 44.30 | temperature | 20 | 720 | > th | dose independent | rect. | 19 | 14 |
| 979 | 44.31 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 11 | 12 |